Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   R5H20_RS00275 Genome accession   NZ_CP137345
Coordinates   49899..50192 (-) Length   97 a.a.
NCBI ID   WP_087962552.1    Uniprot ID   -
Organism   Bacillus sp. KICET-3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 44899..55192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS00235 (R5H20_00235) - 44909..45238 (+) 330 WP_006640371.1 cyclic-di-AMP receptor -
  R5H20_RS00240 (R5H20_00240) - 45250..45690 (+) 441 WP_006640372.1 YaaR family protein -
  R5H20_RS00245 (R5H20_00245) holB 45702..46691 (+) 990 WP_006640373.1 DNA polymerase III subunit delta' -
  R5H20_RS00250 (R5H20_00250) - 46694..47521 (+) 828 WP_006640374.1 stage 0 sporulation family protein -
  R5H20_RS00255 (R5H20_00255) yabA 47536..47898 (+) 363 WP_006640375.1 DNA replication initiation control protein YabA -
  R5H20_RS00260 (R5H20_00260) - 47979..48722 (+) 744 WP_006640376.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  R5H20_RS00265 (R5H20_00265) - 48709..49002 (+) 294 WP_006640377.1 GIY-YIG nuclease family protein -
  R5H20_RS00270 (R5H20_00270) rsmI 48977..49852 (+) 876 WP_006640378.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  R5H20_RS00275 (R5H20_00275) abrB 49899..50192 (-) 294 WP_087962552.1 transition state genes transcriptional regulator AbrB Regulator
  R5H20_RS00280 (R5H20_00280) metG 50696..52684 (+) 1989 WP_006640380.1 methionine--tRNA ligase -
  R5H20_RS00285 (R5H20_00285) - 52771..53538 (+) 768 WP_006640381.1 TatD family hydrolase -
  R5H20_RS00290 (R5H20_00290) - 53785..54984 (+) 1200 WP_006640382.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10779.57 Da        Isoelectric Point: 5.1848

>NTDB_id=897559 R5H20_RS00275 WP_087962552.1 49899..50192(-) (abrB) [Bacillus sp. KICET-3]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSLKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=897559 R5H20_RS00275 WP_087962552.1 49899..50192(-) (abrB) [Bacillus sp. KICET-3]
ATGAATATGAAATCTACAGGTATCGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATTGAACTTCGCCGTAC
ACTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTGGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAGGTTTCTGATGATAACCTGAAACTTGCTGGCGGTAAACTTGTTCTCAGCCCAGAAGGC
GCTGAACAAATCATCAACGAAATTCAAGCTCAGCTTCAATCTCTAAAAAATTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

94.792

98.969

0.938