Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   R5H20_RS00030 Genome accession   NZ_CP137345
Coordinates   3754..4866 (+) Length   370 a.a.
NCBI ID   WP_006639836.1    Uniprot ID   M5P3D1
Organism   Bacillus sp. KICET-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H20_RS00010 (R5H20_00010) - 189..464 (-) 276 WP_061781685.1 hypothetical protein -
  R5H20_RS00015 (R5H20_00015) dnaA 685..2028 (+) 1344 WP_006639833.1 chromosomal replication initiator protein DnaA -
  R5H20_RS00020 (R5H20_00020) dnaN 2216..3352 (+) 1137 WP_006639834.1 DNA polymerase III subunit beta -
  R5H20_RS00025 (R5H20_00025) yaaA 3522..3737 (+) 216 WP_006639835.1 S4 domain-containing protein YaaA -
  R5H20_RS00030 (R5H20_00030) recF 3754..4866 (+) 1113 WP_006639836.1 DNA replication/repair protein RecF Machinery gene
  R5H20_RS00035 (R5H20_00035) remB 4884..5126 (+) 243 WP_006639837.1 extracellular matrix regulator RemB -
  R5H20_RS00040 (R5H20_00040) gyrB 5186..7099 (+) 1914 WP_006639838.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  R5H20_RS00045 (R5H20_00045) gyrA 7290..9764 (+) 2475 WP_006639839.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42437.33 Da        Isoelectric Point: 6.6710

>NTDB_id=897557 R5H20_RS00030 WP_006639836.1 3754..4866(+) (recF) [Bacillus sp. KICET-3]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLNTIQGRVQTFVTTTSVDGIDHQTLNEAEIFRVANGTLLD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=897557 R5H20_RS00030 WP_006639836.1 3754..4866(+) (recF) [Bacillus sp. KICET-3]
TTGTACATCCAAAATCTTACATTATCATCTTACCGTAATTATGAACGCCTTGATCTCCAATTCGAAAACAAAGTGAACGT
GATTATCGGAGAAAACGCCCAAGGCAAGACAAATCTGATGGAAGCGATTTACGTACTTGCGATGGCAAAGTCCCATCGAA
CGTCAAATGACAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTCCC
GTTCCCATCCAGCTTGTCATTTCGAAAAAGGGAAAAAAAGGCAAGGTCAATCATATTGAACAACAGAAACTGAGCCAGTA
TGTCGGGGCTGTAAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAGGTATCACCCGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTCTCACAGCGG
AATCATTTCTTGAAGCAGCTTCAAACAAGAAAACAGACCGATCAAACGATGCTTGATGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGTCTTCAATTTGTTGATCAGCTTGAAAAATGGGCACAGCCTATCCATTCCGGAA
TTTCAAGAGGTCTTGAAGAATTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGTGTATCCCTTTCAGGCCCCCACAG
GGATGATGTTCTTTTCTACGTCAATGGCCGCGATGTGCAGACTTACGGATCACAGGGCCAGCAGCGTACGACGGCATTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATACCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCATTTGCTCAACACCATTCAAGGCCGTGTTCAAACCTTCGTAACGACGACGAGCGT
TGATGGAATTGATCATCAAACCTTAAACGAAGCGGAAATCTTTCGTGTTGCAAATGGCACGCTATTGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5P3D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

88.618

99.73

0.884