Detailed information NTG0897549

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABDE81_RS22115
• Genome accession: NZ_CP155555
• Coordinates: 4499534..4500559 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LZHX12
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4494534..4505559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABDE81_RS22095	metJ	4495595..4495912 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
ABDE81_RS22100	yiiX	4496096..4496704 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
ABDE81_RS22105	rpmE	4496765..4496977 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
ABDE81_RS22110	priA	4497180..4499378 (+)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
ABDE81_RS22115	cytR	4499534..4500559 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ABDE81_RS22120	ftsN	4500651..4501610 (+)	960	WP_000068828.1	cell division protein FtsN	-
ABDE81_RS22125	hslV	4501703..4502233 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ABDE81_RS22130	hslU	4502243..4503574 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
ABDE81_RS22135	menA	4503641..4504567 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABDE81_RS22140	rraA	4504660..4505145 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ABDE81_RS22145	zapB	4505230..4505475 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=897549 ABDE81_RS22115 WP_000644904.1 4499534..4500559(+) (cytR) [Escherichia coli strain LZHX12]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=897549 ABDE81_RS22115 WP_000644904.1 4499534..4500559(+) (cytR) [Escherichia coli strain LZHX12]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628