Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   OHP008_RS00865 Genome accession   NZ_AP024965
Coordinates   196904..197185 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain #8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 191904..202185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP008_RS00845 (OHP008_01710) - 192614..193954 (-) 1341 WP_223888438.1 COG3014 family protein -
  OHP008_RS00855 (OHP008_01720) comB4 194275..196638 (-) 2364 WP_223888439.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  OHP008_RS00860 (OHP008_01730) comB3 196641..196904 (-) 264 WP_029650115.1 hypothetical protein Machinery gene
  OHP008_RS00865 (OHP008_01740) comB2 196904..197185 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  OHP008_RS00870 (OHP008_01750) - 197330..198157 (-) 828 WP_180497101.1 DUF5718 family protein -
  OHP008_RS00875 (OHP008_01760) - 198246..199298 (-) 1053 WP_220836054.1 MnmA/TRMU family protein -
  OHP008_RS00880 (OHP008_01770) dnaG 199295..200974 (-) 1680 WP_223888440.1 DNA primase -
  OHP008_RS00885 (OHP008_01780) groES 201248..201604 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=89754 OHP008_RS00865 WP_001272686.1 196904..197185(-) (comB2) [Helicobacter pylori strain #8]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=89754 OHP008_RS00865 WP_001272686.1 196904..197185(-) (comB2) [Helicobacter pylori strain #8]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGCTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment