Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   OHP008_RS00860 Genome accession   NZ_AP024965
Coordinates   196641..196904 (-) Length   87 a.a.
NCBI ID   WP_029650115.1    Uniprot ID   -
Organism   Helicobacter pylori strain #8     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 191641..201904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHP008_RS00845 (OHP008_01710) - 192614..193954 (-) 1341 WP_223888438.1 COG3014 family protein -
  OHP008_RS00855 (OHP008_01720) comB4 194275..196638 (-) 2364 WP_223888439.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  OHP008_RS00860 (OHP008_01730) comB3 196641..196904 (-) 264 WP_029650115.1 hypothetical protein Machinery gene
  OHP008_RS00865 (OHP008_01740) comB2 196904..197185 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  OHP008_RS00870 (OHP008_01750) - 197330..198157 (-) 828 WP_180497101.1 DUF5718 family protein -
  OHP008_RS00875 (OHP008_01760) - 198246..199298 (-) 1053 WP_220836054.1 MnmA/TRMU family protein -
  OHP008_RS00880 (OHP008_01770) dnaG 199295..200974 (-) 1680 WP_223888440.1 DNA primase -
  OHP008_RS00885 (OHP008_01780) groES 201248..201604 (+) 357 WP_000671954.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.13 Da        Isoelectric Point: 9.5741

>NTDB_id=89753 OHP008_RS00860 WP_029650115.1 196641..196904(-) (comB3) [Helicobacter pylori strain #8]
MIILSASVRNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=89753 OHP008_RS00860 WP_029650115.1 196641..196904(-) (comB3) [Helicobacter pylori strain #8]
ATGATTATCCTGTCAGCGAGCGTGAGGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTCGCACCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966

Multiple sequence alignment