Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABDE81_RS14980 Genome accession   NZ_CP155555
Coordinates   3014645..3015274 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain LZHX12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3009645..3020274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDE81_RS14965 helD 3009887..3011941 (-) 2055 WP_001295354.1 DNA helicase IV -
  ABDE81_RS14970 yccF 3012064..3012510 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABDE81_RS14975 yccS 3012520..3014682 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ABDE81_RS14980 sxy/tfoX 3014645..3015274 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABDE81_RS14985 sulA 3015493..3016002 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABDE81_RS14990 ompA 3016359..3017399 (+) 1041 WP_000750416.1 porin OmpA -
  ABDE81_RS14995 matP 3017475..3017927 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABDE81_RS15000 ycbZ 3018113..3019873 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=897526 ABDE81_RS14980 WP_000839153.1 3014645..3015274(-) (sxy/tfoX) [Escherichia coli strain LZHX12]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=897526 ABDE81_RS14980 WP_000839153.1 3014645..3015274(-) (sxy/tfoX) [Escherichia coli strain LZHX12]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1