Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R6H26_RS19245 Genome accession   NZ_CP137338
Coordinates   4033469..4034923 (+) Length   484 a.a.
NCBI ID   WP_404784709.1    Uniprot ID   -
Organism   Altericista sp. CCNU0014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4028469..4039923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6H26_RS19230 (R6H26_19100) - 4029256..4030680 (+) 1425 WP_404784704.1 efflux RND transporter periplasmic adaptor subunit -
  R6H26_RS19235 (R6H26_19105) - 4031304..4032434 (-) 1131 WP_404784706.1 ABC transporter permease -
  R6H26_RS19240 (R6H26_19110) rpaB 4032580..4033311 (-) 732 WP_404784707.1 response regulator transcription factor RpaB -
  R6H26_RS19245 (R6H26_19115) radA 4033469..4034923 (+) 1455 WP_404784709.1 DNA repair protein RadA Machinery gene
  R6H26_RS19250 (R6H26_19120) - 4035016..4036701 (-) 1686 WP_404784710.1 ATP-binding protein -
  R6H26_RS19255 (R6H26_19125) - 4036767..4037666 (-) 900 WP_404784711.1 tetratricopeptide repeat protein -
  R6H26_RS19260 (R6H26_19130) - 4037677..4038366 (-) 690 WP_404784713.1 molecular chaperone DnaJ -
  R6H26_RS19265 (R6H26_19135) - 4038399..4039304 (-) 906 WP_404784715.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 51169.82 Da        Isoelectric Point: 7.1199

>NTDB_id=897512 R6H26_RS19245 WP_404784709.1 4033469..4034923(+) (radA) [Altericista sp. CCNU0014]
MAKTRTKFVCNECGAESAQFFGKCPACNSWGTLVEQAVAASSGAMDGGRLGSAQRHSSRSGSVPEPQAALTLAQIVEVST
QRFNSGYSELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQMMNRLATQHRVLYVCAEESGQQVKLRAQRLGTAHLMAAPL
ATPPPADKADLYLLPETDLEVIVQELDALQPQVAAIDSIQAIYMPTMTSAPGSVAQVRECTAALMRLAKRQHITLFIVGH
VTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRSVKNRFGATHEVGVFEMSDKGLEEVLNPSALFLGDRGEATPGTAT
IVACEGTRPIVVELQALVAPTSYASPRRSTTGVEYNRFLQILAVLEKRLGIPLSKLDAYVSSTGGLNVSEPAADLGVAIA
VAASFRDRLVDPYTAIVGEVGLGGQVRSVSQLELRLKEAAKLGFKRAIIPKGQALADTGLELIPVGRVADAIVAALPAQS
RSSD

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=897512 R6H26_RS19245 WP_404784709.1 4033469..4034923(+) (radA) [Altericista sp. CCNU0014]
ATGGCAAAAACGCGTACGAAATTTGTTTGCAATGAATGCGGAGCCGAATCGGCTCAGTTTTTTGGCAAATGCCCTGCCTG
TAATAGTTGGGGTACTTTGGTCGAACAAGCGGTAGCGGCATCCTCGGGAGCGATGGATGGGGGGCGCCTAGGTTCGGCAC
AGCGGCATTCTAGCCGGAGCGGGTCTGTACCGGAACCGCAAGCCGCATTGACTTTGGCACAAATTGTCGAAGTCTCTACG
CAGCGCTTTAATTCTGGCTATTCTGAGTTGGATCGGGTATTGGGTGGCGGTATCGTACCGGGTTCTCTGGTTTTGGTGGG
AGGGGACCCCGGCATCGGAAAATCGACATTGCTGTTGCAAATGATGAATAGGCTGGCAACCCAGCACCGCGTGCTCTACG
TCTGTGCCGAGGAGTCGGGGCAGCAGGTGAAGCTGAGGGCGCAGCGGCTGGGGACGGCACATTTGATGGCTGCGCCTCTA
GCGACACCTCCCCCAGCAGATAAGGCCGATTTATACCTGCTGCCAGAAACCGATCTGGAGGTTATCGTGCAGGAGCTAGA
CGCGCTCCAGCCTCAGGTGGCGGCGATCGACAGCATTCAGGCCATTTATATGCCCACAATGACGTCTGCTCCTGGCTCTG
TGGCCCAAGTGCGCGAATGTACGGCAGCGTTGATGCGATTGGCGAAGCGACAGCATATCACATTATTTATTGTGGGGCAC
GTCACCAAGGAAGGGGCGATCGCCGGGCCGAAGGTCCTGGAACATCTCGTGGACACGGTTCTGTACTTTGAGGGCGATCG
CTTTGCCAGCCATCGGCTCTTGCGCTCGGTCAAGAACCGCTTTGGGGCCACCCACGAGGTGGGCGTGTTTGAGATGAGCG
ACAAGGGCTTGGAGGAAGTGCTCAACCCCTCGGCGCTGTTTTTAGGCGATCGCGGCGAAGCAACGCCGGGAACCGCGACC
ATCGTGGCTTGCGAGGGCACCCGTCCCATCGTGGTAGAGCTGCAGGCACTGGTGGCCCCCACGAGCTACGCGTCGCCCCG
GCGCTCGACAACGGGGGTAGAATACAATCGCTTTTTGCAAATCTTGGCGGTACTGGAAAAGCGGCTCGGCATTCCGCTCT
CGAAGCTGGATGCCTACGTTTCCTCGACGGGAGGGCTTAACGTGAGCGAACCGGCGGCAGATTTAGGCGTGGCGATCGCC
GTGGCAGCCAGTTTCCGAGATCGGCTGGTAGATCCCTATACGGCGATCGTGGGCGAGGTAGGATTGGGTGGGCAGGTGCG
CTCCGTCTCCCAGCTGGAACTGCGGTTGAAAGAGGCTGCCAAGCTGGGATTTAAGCGAGCCATTATTCCCAAAGGTCAAG
CGCTAGCAGATACGGGCCTGGAGTTGATTCCCGTGGGGCGAGTGGCCGATGCGATCGTGGCGGCACTGCCCGCCCAGTCG
AGGTCTAGCGATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(75-245)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.167

99.174

0.488
  radA Streptococcus mitis NCTC 12261

47.788

93.388

0.446
  radA Streptococcus pneumoniae Rx1

47.788

93.388

0.446
  radA Streptococcus pneumoniae D39

47.788

93.388

0.446
  radA Streptococcus pneumoniae R6

47.788

93.388

0.446
  radA Streptococcus pneumoniae TIGR4

47.788

93.388

0.446
  radA Streptococcus mitis SK321

47.788

93.388

0.446