Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABC806_RS10875 Genome accession   NZ_CP155539
Coordinates   2118694..2119464 (-) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae TIGR4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2113694..2124464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS10845 (ABC806_10840) comA 2113829..2115982 (-) 2154 WP_000668284.1 peptide cleavage/export ABC transporter ComA Regulator
  ABC806_RS10850 (ABC806_10845) - 2116569..2116694 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  ABC806_RS10855 (ABC806_10850) blpU 2116697..2116927 (-) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  ABC806_RS10860 (ABC806_10855) - 2117130..2117420 (-) 291 Protein_2105 transposase family protein -
  ABC806_RS10865 (ABC806_10860) - 2117466..2117699 (-) 234 WP_000136447.1 acyl carrier protein -
  ABC806_RS10870 (ABC806_10865) plsX 2117705..2118697 (-) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  ABC806_RS10875 (ABC806_10870) recO 2118694..2119464 (-) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  ABC806_RS10880 (ABC806_10875) - 2119461..2120630 (-) 1170 WP_000366370.1 pyridoxal phosphate-dependent aminotransferase -
  ABC806_RS10885 (ABC806_10880) - 2120779..2121789 (+) 1011 WP_000009144.1 YeiH family protein -
  ABC806_RS10890 (ABC806_10885) - 2121786..2122067 (-) 282 WP_001827121.1 hypothetical protein -
  ABC806_RS10895 (ABC806_10890) - 2122108..2122545 (-) 438 WP_000076479.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=897471 ABC806_RS10875 WP_000616164.1 2118694..2119464(-) (recO) [Streptococcus pneumoniae TIGR4]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=897471 ABC806_RS10875 WP_000616164.1 2118694..2119464(-) (recO) [Streptococcus pneumoniae TIGR4]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992