Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   LDM87_RS07315 Genome accession   NZ_AP024964
Coordinates   1533641..1533922 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain #6     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1528641..1538922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM87_RS07295 (OHP006_14590) - 1529351..1530691 (-) 1341 WP_041201448.1 COG3014 family protein -
  LDM87_RS07305 (OHP006_14600) comB4 1531012..1533375 (-) 2364 WP_223892856.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  LDM87_RS07310 (OHP006_14610) comB3 1533378..1533641 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  LDM87_RS07315 (OHP006_14620) comB2 1533641..1533922 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  LDM87_RS07320 (OHP006_14630) - 1534067..1534894 (-) 828 WP_223892857.1 DUF5718 family protein -
  LDM87_RS07325 (OHP006_14640) - 1534983..1536035 (-) 1053 WP_000721156.1 MnmA/TRMU family protein -
  LDM87_RS07330 (OHP006_14650) dnaG 1536032..1537711 (-) 1680 WP_223892858.1 DNA primase -
  LDM87_RS07335 (OHP006_14660) groES 1537987..1538343 (+) 357 WP_000671953.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=89743 LDM87_RS07315 WP_001272686.1 1533641..1533922(-) (comB2) [Helicobacter pylori strain #6]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=89743 LDM87_RS07315 WP_001272686.1 1533641..1533922(-) (comB2) [Helicobacter pylori strain #6]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment