Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | LDM87_RS07310 | Genome accession | NZ_AP024964 |
| Coordinates | 1533378..1533641 (-) | Length | 87 a.a. |
| NCBI ID | WP_000584971.1 | Uniprot ID | A0A0L0QIL1 |
| Organism | Helicobacter pylori strain #6 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1528378..1538641
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM87_RS07295 (OHP006_14590) | - | 1529351..1530691 (-) | 1341 | WP_041201448.1 | COG3014 family protein | - |
| LDM87_RS07305 (OHP006_14600) | comB4 | 1531012..1533375 (-) | 2364 | WP_223892856.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| LDM87_RS07310 (OHP006_14610) | comB3 | 1533378..1533641 (-) | 264 | WP_000584971.1 | hypothetical protein | Machinery gene |
| LDM87_RS07315 (OHP006_14620) | comB2 | 1533641..1533922 (-) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| LDM87_RS07320 (OHP006_14630) | - | 1534067..1534894 (-) | 828 | WP_223892857.1 | DUF5718 family protein | - |
| LDM87_RS07325 (OHP006_14640) | - | 1534983..1536035 (-) | 1053 | WP_000721156.1 | MnmA/TRMU family protein | - |
| LDM87_RS07330 (OHP006_14650) | dnaG | 1536032..1537711 (-) | 1680 | WP_223892858.1 | DNA primase | - |
| LDM87_RS07335 (OHP006_14660) | groES | 1537987..1538343 (+) | 357 | WP_000671953.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10076.17 Da Isoelectric Point: 9.5507
>NTDB_id=89742 LDM87_RS07310 WP_000584971.1 1533378..1533641(-) (comB3) [Helicobacter pylori strain #6]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=89742 LDM87_RS07310 WP_000584971.1 1533378..1533641(-) (comB3) [Helicobacter pylori strain #6]
ATGATTATTCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGTTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
ATGATTATTCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGTTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCCAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
96.552 |
100 |
0.966 |