Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ABC806_RS05530 Genome accession   NZ_CP155539
Coordinates   1061175..1062245 (-) Length   356 a.a.
NCBI ID   WP_000817881.1    Uniprot ID   Q97QP2
Organism   Streptococcus pneumoniae TIGR4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1056175..1067245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC806_RS05515 (ABC806_05505) - 1057265..1058308 (+) 1044 WP_000752705.1 dihydrolipoamide acetyltransferase -
  ABC806_RS05520 (ABC806_05510) lpdA 1058354..1060057 (+) 1704 WP_001162908.1 dihydrolipoyl dehydrogenase -
  ABC806_RS05525 (ABC806_05515) - 1060121..1061110 (+) 990 WP_000873990.1 lipoate--protein ligase -
  ABC806_RS05530 (ABC806_05520) xerS 1061175..1062245 (-) 1071 WP_000817881.1 tyrosine recombinase XerS Machinery gene
  ABC806_RS05535 (ABC806_05525) - 1062829..1064379 (-) 1551 WP_000392544.1 ClC family H(+)/Cl(-) exchange transporter -
  ABC806_RS05540 (ABC806_05530) - 1064395..1065174 (-) 780 WP_000201098.1 ribonuclease HII -
  ABC806_RS05545 (ABC806_05535) ylqF 1065161..1066012 (-) 852 WP_000201315.1 ribosome biogenesis GTPase YlqF -
  ABC806_RS05550 - 1066231..1066407 (-) 177 WP_078064061.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41190.27 Da        Isoelectric Point: 9.5475

>NTDB_id=897425 ABC806_RS05530 WP_000817881.1 1061175..1062245(-) (xerS) [Streptococcus pneumoniae TIGR4]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGCKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=897425 ABC806_RS05530 WP_000817881.1 1061175..1062245(-) (xerS) [Streptococcus pneumoniae TIGR4]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCCACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTTGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97QP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994