Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   LDM87_RS07160 Genome accession   NZ_AP024964
Coordinates   1497559..1498872 (-) Length   437 a.a.
NCBI ID   WP_223892843.1    Uniprot ID   -
Organism   Helicobacter pylori strain #6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1492559..1503872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM87_RS07130 (OHP006_14260) nadC 1493022..1493843 (-) 822 WP_000404033.1 carboxylating nicotinate-nucleotide diphosphorylase -
  LDM87_RS07135 (OHP006_14270) nadA 1493843..1494853 (-) 1011 WP_001141771.1 quinolinate synthase NadA -
  LDM87_RS07140 (OHP006_14280) - 1494843..1495646 (-) 804 WP_212882478.1 phosphatidylserine decarboxylase -
  LDM87_RS07145 (OHP006_14290) - 1495643..1496146 (-) 504 WP_180654767.1 DUF6115 domain-containing protein -
  LDM87_RS07150 (OHP006_14300) - 1496159..1496653 (-) 495 WP_014537179.1 hypothetical protein -
  LDM87_RS07155 (OHP006_14310) mqnP 1496646..1497530 (-) 885 WP_223892842.1 menaquinone biosynthesis prenyltransferase MqnP -
  LDM87_RS07160 (OHP006_14320) comEC/comE3 1497559..1498872 (-) 1314 WP_223892843.1 ComEC/Rec2 family competence protein Machinery gene
  LDM87_RS07165 (OHP006_14330) - 1498869..1500329 (-) 1461 WP_000349769.1 replicative DNA helicase -
  LDM87_RS07170 (OHP006_14340) - 1500340..1501734 (-) 1395 WP_000954036.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  LDM87_RS07175 (OHP006_14350) crdS 1501737..1502924 (-) 1188 WP_223894352.1 copper-sensing histidine kinase CrdS -
  LDM87_RS07180 (OHP006_14360) crdR 1502905..1503546 (-) 642 WP_001169802.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50221.27 Da        Isoelectric Point: 9.8537

>NTDB_id=89739 LDM87_RS07160 WP_223892843.1 1497559..1498872(-) (comEC/comE3) [Helicobacter pylori strain #6]
MKDKTFQGAFELFTTPKEYLLCGVILSLLLALNLYLECLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKIQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSVHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLLSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDSILNMPLTIPTIFVFSPLWLLGTHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=89739 LDM87_RS07160 WP_223892843.1 1497559..1498872(-) (comEC/comE3) [Helicobacter pylori strain #6]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTTTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATGCTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGATCCAATCAAAGGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGTTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTCTCTCTCTTTTTTATGCCCCTTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
GCATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGACGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.822

100

0.938

Multiple sequence alignment