Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ABC812_RS08785 Genome accession   NZ_CP155537
Coordinates   1724744..1725454 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain DP1322     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1719744..1730454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC812_RS08770 (ABC812_08765) - 1720399..1720647 (-) 249 WP_000364990.1 YneF family protein -
  ABC812_RS08775 (ABC812_08770) treC 1720789..1722414 (-) 1626 WP_000171205.1 alpha,alpha-phosphotrehalase -
  ABC812_RS08780 (ABC812_08775) treP 1722592..1724559 (-) 1968 WP_000514308.1 PTS system trehalose-specific EIIBC component -
  ABC812_RS08785 (ABC812_08780) treR 1724744..1725454 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  ABC812_RS08790 (ABC812_08785) - 1725610..1726916 (+) 1307 Protein_1740 transposase -
  ABC812_RS08795 (ABC812_08790) - 1726991..1727917 (-) 927 WP_001291296.1 ATP-binding cassette domain-containing protein -
  ABC812_RS08800 (ABC812_08795) amiE 1727928..1728995 (-) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  ABC812_RS08805 (ABC812_08800) amiD 1729004..1729930 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=897308 ABC812_RS08785 WP_000760673.1 1724744..1725454(+) (treR) [Streptococcus pneumoniae strain DP1322]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=897308 ABC812_RS08785 WP_000760673.1 1724744..1725454(+) (treR) [Streptococcus pneumoniae strain DP1322]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTTCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATCTCACTCGCCAAATCGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593