Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   LDM87_RS00010 Genome accession   NZ_AP024964
Coordinates   1590..3023 (+) Length   477 a.a.
NCBI ID   WP_223892972.1    Uniprot ID   -
Organism   Helicobacter pylori strain #6     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM87_RS00005 (OHP006_00010) dnaA 1..1368 (+) 1368 WP_223892970.1 chromosomal replication initiator protein DnaA -
  LDM87_RS00010 (OHP006_00020) comH 1590..3023 (+) 1434 WP_223892972.1 competence protein Machinery gene
  LDM87_RS00020 (OHP006_00030) - 3201..3953 (+) 753 WP_000767500.1 exodeoxyribonuclease III -
  LDM87_RS00025 (OHP006_00040) - 3950..4585 (-) 636 WP_000668030.1 outer membrane protein -
  LDM87_RS00030 (OHP006_00050) - 4589..4942 (-) 354 WP_223892975.1 hypothetical protein -
  LDM87_RS00035 (OHP006_00060) recG 5024..6889 (+) 1866 WP_223892983.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54695.71 Da        Isoelectric Point: 7.2023

>NTDB_id=89724 LDM87_RS00010 WP_223892972.1 1590..3023(+) (comH) [Helicobacter pylori strain #6]
MKKILCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNVPIQKPQNKPTSSQQSLQNFPYTESKLGSKNPKNSLLQPLAT
PNKISSANEVKTPTNDTKPTLKHSSEDQENNLFVAPPTEKTLPNNTPNANINEHNESNENRDSVEKQAIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAIYERPKQDDQVESTFYETNELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=89724 LDM87_RS00010 WP_223892972.1 1590..3023(+) (comH) [Helicobacter pylori strain #6]
ATGAAAAAAATCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCAAATGCCTTCTTTAAACGTGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAGCAAT
CTCTTCAAAACTTTCCTTACACAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAATGACACTAAACCCACTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACTCCTAACGCTAATATTAATGAAC
ACAATGAAAGCAATGAAAATAGGGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAGCAGACTGC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCATTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGTGAGTATCAAATCACCACACAATTAGTGAAAGCCATTTATGAGCGTCCCAAACAAGACGATCAAGTAG
AGTCGACTTTTTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAA
GCACGCCTTTGAGTATTGAAAATTCTCGTGTTGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.067

100

0.925

Multiple sequence alignment