Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   LDM85_RS07260 Genome accession   NZ_AP024963
Coordinates   1511166..1511447 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain #5     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1506166..1516447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM85_RS07240 (OHP005_14620) - 1506877..1508217 (-) 1341 WP_223887498.1 COG3014 family protein -
  LDM85_RS07250 (OHP005_14630) comB4 1508538..1510901 (-) 2364 WP_223887499.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  LDM85_RS07255 (OHP005_14640) comB3 1510903..1511166 (-) 264 WP_120935524.1 competence protein ComB Machinery gene
  LDM85_RS07260 (OHP005_14650) comB2 1511166..1511447 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  LDM85_RS07265 (OHP005_14660) - 1511592..1512419 (-) 828 WP_223887500.1 DUF5718 family protein -
  LDM85_RS07270 (OHP005_14670) - 1512510..1513562 (-) 1053 WP_223887501.1 MnmA/TRMU family protein -
  LDM85_RS07275 (OHP005_14680) dnaG 1513559..1515238 (-) 1680 WP_223887502.1 DNA primase -
  LDM85_RS07280 (OHP005_14690) groES 1515513..1515869 (+) 357 WP_000671958.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=89723 LDM85_RS07260 WP_001272686.1 1511166..1511447(-) (comB2) [Helicobacter pylori strain #5]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=89723 LDM85_RS07260 WP_001272686.1 1511166..1511447(-) (comB2) [Helicobacter pylori strain #5]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment