Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   LDM85_RS07255 Genome accession   NZ_AP024963
Coordinates   1510903..1511166 (-) Length   87 a.a.
NCBI ID   WP_120935524.1    Uniprot ID   -
Organism   Helicobacter pylori strain #5     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1505903..1516166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM85_RS07240 (OHP005_14620) - 1506877..1508217 (-) 1341 WP_223887498.1 COG3014 family protein -
  LDM85_RS07250 (OHP005_14630) comB4 1508538..1510901 (-) 2364 WP_223887499.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  LDM85_RS07255 (OHP005_14640) comB3 1510903..1511166 (-) 264 WP_120935524.1 competence protein ComB Machinery gene
  LDM85_RS07260 (OHP005_14650) comB2 1511166..1511447 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  LDM85_RS07265 (OHP005_14660) - 1511592..1512419 (-) 828 WP_223887500.1 DUF5718 family protein -
  LDM85_RS07270 (OHP005_14670) - 1512510..1513562 (-) 1053 WP_223887501.1 MnmA/TRMU family protein -
  LDM85_RS07275 (OHP005_14680) dnaG 1513559..1515238 (-) 1680 WP_223887502.1 DNA primase -
  LDM85_RS07280 (OHP005_14690) groES 1515513..1515869 (+) 357 WP_000671958.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10076.13 Da        Isoelectric Point: 9.5741

>NTDB_id=89722 LDM85_RS07255 WP_120935524.1 1510903..1511166(-) (comB3) [Helicobacter pylori strain #5]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSRIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=89722 LDM85_RS07255 WP_120935524.1 1510903..1511166(-) (comB3) [Helicobacter pylori strain #5]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGTAGAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

96.552

100

0.966

Multiple sequence alignment