Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ABC804_RS08260 Genome accession   NZ_CP155536
Coordinates   1565351..1565617 (-) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M264-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1560351..1570617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC804_RS08250 (ABC804_08245) metF 1561911..1562777 (-) 867 WP_000089968.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  ABC804_RS08255 (ABC804_08250) metE 1562841..1565090 (-) 2250 WP_000108202.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  ABC804_RS08260 (ABC804_08255) HI0659 1565351..1565617 (-) 267 WP_001808618.1 helix-turn-helix transcriptional regulator Machinery gene
  ABC804_RS08265 (ABC804_08260) - 1565743..1566146 (-) 404 Protein_1580 helix-turn-helix domain-containing protein -
  ABC804_RS08270 (ABC804_08265) - 1566294..1567295 (+) 1002 WP_000597980.1 endonuclease/exonuclease/phosphatase family protein -
  ABC804_RS08275 (ABC804_08270) pheT 1567363..1569768 (-) 2406 WP_000961504.1 phenylalanine--tRNA ligase subunit beta -
  ABC804_RS08280 (ABC804_08275) - 1569845..1570354 (-) 510 WP_000619952.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=897214 ABC804_RS08260 WP_001808618.1 1565351..1565617(-) (HI0659) [Streptococcus pneumoniae strain M264-3]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=897214 ABC804_RS08260 WP_001808618.1 1565351..1565617(-) (HI0659) [Streptococcus pneumoniae strain M264-3]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534