Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   ABC804_RS05535 Genome accession   NZ_CP155536
Coordinates   1021831..1022295 (+) Length   154 a.a.
NCBI ID   WP_001135764.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M264-3     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1016831..1027295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC804_RS05510 (ABC804_05510) - 1018757..1018831 (+) 75 Protein_1034 dihydroxyacetone kinase subunit L -
  ABC804_RS05515 (ABC804_05515) dhaM 1018831..1019199 (+) 369 WP_000443786.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  ABC804_RS05520 (ABC804_05520) - 1019658..1020371 (+) 714 WP_000499429.1 YjjG family noncanonical pyrimidine nucleotidase -
  ABC804_RS05525 (ABC804_05525) - 1020385..1021032 (+) 648 WP_001809355.1 hypothetical protein -
  ABC804_RS05530 (ABC804_05530) - 1021168..1021821 (+) 654 WP_000401326.1 uracil-DNA glycosylase -
  ABC804_RS05535 (ABC804_05535) mutX 1021831..1022295 (+) 465 WP_001135764.1 8-oxo-dGTP diphosphatase Machinery gene
  ABC804_RS05540 (ABC804_05540) - 1022308..1023576 (+) 1269 WP_000924466.1 dihydroorotase -
  ABC804_RS05545 (ABC804_05545) - 1023590..1023850 (+) 261 WP_001105925.1 hypothetical protein -
  ABC804_RS05550 (ABC804_05550) pdrM 1023861..1025222 (+) 1362 WP_000278539.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  ABC804_RS05555 (ABC804_05555) - 1025376..1026344 (+) 969 WP_000105360.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17786.12 Da        Isoelectric Point: 4.2287

>NTDB_id=897192 ABC804_RS05535 WP_001135764.1 1021831..1022295(+) (mutX) [Streptococcus pneumoniae strain M264-3]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTADLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=897192 ABC804_RS05535 WP_001135764.1 1021831..1022295(+) (mutX) [Streptococcus pneumoniae strain M264-3]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGCGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACAGCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGACGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.052

100

0.981