Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   R5O23_RS06025 Genome accession   NZ_CP137242
Coordinates   1342278..1343642 (+) Length   454 a.a.
NCBI ID   WP_024742073.1    Uniprot ID   A0A2H1E6U4
Organism   Tenacibaculum maritimum strain CCCM 140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1337278..1348642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5O23_RS06005 (R5O23_05980) panC 1337556..1338416 (+) 861 WP_136439139.1 pantoate--beta-alanine ligase -
  R5O23_RS06010 (R5O23_05985) panD 1338446..1338796 (+) 351 WP_024742076.1 aspartate 1-decarboxylase -
  R5O23_RS06015 (R5O23_05990) - 1338799..1339752 (+) 954 WP_024742075.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  R5O23_RS06020 (R5O23_05995) - 1339809..1342220 (+) 2412 WP_407265691.1 helix-turn-helix domain-containing protein -
  R5O23_RS06025 (R5O23_06000) radA 1342278..1343642 (+) 1365 WP_024742073.1 DNA repair protein RadA Machinery gene
  R5O23_RS06030 (R5O23_06005) - 1343713..1344339 (-) 627 WP_159320902.1 DUF6973 domain-containing protein -
  R5O23_RS06035 (R5O23_06010) - 1344587..1345438 (+) 852 WP_024742071.1 helix-turn-helix domain-containing protein -
  R5O23_RS06040 (R5O23_06015) - 1345672..1346214 (+) 543 WP_159244655.1 carboxymuconolactone decarboxylase family protein -
  R5O23_RS06045 (R5O23_06020) - 1346250..1346612 (+) 363 WP_024742069.1 hypothetical protein -
  R5O23_RS06050 (R5O23_06025) - 1346983..1347849 (+) 867 WP_024742068.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49729.18 Da        Isoelectric Point: 6.7652

>NTDB_id=897164 R5O23_RS06025 WP_024742073.1 1342278..1343642(+) (radA) [Tenacibaculum maritimum strain CCCM 140]
MAKTKTTFFCQNCGTQHAKWVGQCGSCKEWNTIVEEVIQKEEKRNWKQATTAKKNNTKPLLVNEIQLNPEERISTNNNEL
DTVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALQISQKVLYVSGEESQSQIKMRAERLEEASNSNCLILTETNTQQIFKN
IEEVVPDVLVIDSIQTLHTNIIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGHIAGPKILEHMVDVVLQFEG
DRNHTYRILRSQKNRFGSTAELGIYEMLSNGLREISNPSEILISKKDADLSGTAIASTLEGVRPLMIEIQALVSTAVYGT
PQRSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNITGGIHVDDPAIDLAVVAAILSSNQDLAISPDVCFAAEVGLAGE
IRPVSKIDQRILEAEKLGYKTFVASKYNKITSKDHTIKLLLVGKIEEAFATLFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=897164 R5O23_RS06025 WP_024742073.1 1342278..1343642(+) (radA) [Tenacibaculum maritimum strain CCCM 140]
ATGGCTAAAACTAAAACAACCTTTTTTTGTCAAAATTGTGGAACCCAGCACGCAAAATGGGTGGGGCAATGTGGTTCTTG
TAAAGAATGGAATACTATTGTAGAAGAAGTTATTCAAAAAGAAGAAAAAAGGAACTGGAAGCAAGCAACAACAGCAAAAA
AAAATAATACGAAACCGTTATTAGTTAATGAAATTCAACTAAATCCAGAAGAAAGAATTTCAACAAATAATAATGAGTTA
GATACCGTTTTAGGAGGAGGTTTGGTAAAAGGATCTGTAACACTTTTAGGAGGTGAACCAGGTATTGGTAAGTCAACTTT
ACTGTTACAGGTAGCATTGCAAATTAGTCAAAAAGTTTTATACGTTTCAGGAGAAGAAAGCCAATCGCAAATAAAAATGC
GAGCAGAAAGGTTAGAAGAAGCAAGTAATTCCAATTGTTTAATTTTAACAGAGACGAATACGCAGCAAATTTTTAAAAAT
ATAGAAGAGGTAGTTCCAGATGTATTGGTAATAGACTCTATTCAAACATTACATACCAATATCATAGAAGCTTCTCCGGG
AAGTATTTCTCAAATTCGTGAAACCTCAGCAGAACTAATAAAATTTGCAAAAGAAACAGCAACGCCAGTATTGTTAATAG
GGCACATTAATAAGGAAGGTCATATTGCTGGTCCAAAAATATTGGAGCATATGGTAGATGTTGTTTTGCAGTTTGAAGGA
GACAGGAATCATACATATCGAATTTTGCGCTCGCAAAAAAATAGATTTGGATCTACTGCTGAGTTAGGTATTTACGAAAT
GTTATCTAATGGGCTTAGAGAAATTTCTAATCCATCAGAAATACTAATTTCTAAAAAAGATGCAGATTTAAGTGGTACGG
CAATTGCTTCTACACTGGAAGGAGTTCGACCGTTGATGATAGAAATTCAGGCATTGGTAAGCACTGCGGTATATGGAACC
CCACAAAGATCAACAACAGGGTACAATTTAAAGAGGCTTCACATGATTTTAGCAGTTTTAGAAAAACGAGCAGGGTTCAA
GTTAGGAGCAAAAGATGTCTTTTTAAATATTACAGGGGGGATTCATGTAGATGATCCCGCGATTGATCTTGCTGTTGTTG
CTGCAATTTTATCTTCAAATCAAGACCTAGCTATAAGTCCAGACGTATGCTTTGCAGCCGAAGTGGGATTGGCTGGAGAA
ATAAGACCCGTGTCCAAAATAGATCAACGAATTTTAGAGGCTGAAAAACTTGGTTATAAAACTTTTGTAGCTTCTAAGTA
CAATAAGATTACTTCAAAAGATCATACAATAAAGTTACTATTGGTAGGAAAGATAGAGGAGGCTTTTGCTACATTATTTG
CTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(332-428)

AAA domain (AAA_25)

(71-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2H1E6U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

48.253

100

0.487
  radA Streptococcus pneumoniae R6

48.253

100

0.487
  radA Streptococcus pneumoniae TIGR4

48.253

100

0.487
  radA Streptococcus mitis NCTC 12261

48.253

100

0.487
  radA Streptococcus pneumoniae D39

48.253

100

0.487
  radA Streptococcus mitis SK321

48.035

100

0.485
  radA Bacillus subtilis subsp. subtilis str. 168

47.692

100

0.478