Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | RP300_RS09225 | Genome accession | NZ_CP137240 |
| Coordinates | 1977488..1978759 (-) | Length | 423 a.a. |
| NCBI ID | WP_317849699.1 | Uniprot ID | - |
| Organism | Oligella urethralis strain MSHR-50412PR | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1972488..1983759
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RP300_RS09200 (RP300_01886) | nusB | 1973228..1973671 (-) | 444 | WP_018025831.1 | transcription antitermination factor NusB | - |
| RP300_RS09205 (RP300_01887) | ribH | 1973683..1974222 (-) | 540 | WP_018025832.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| RP300_RS09210 (RP300_01888) | ribBA | 1974267..1975454 (-) | 1188 | WP_317850305.1 | bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II | - |
| RP300_RS09215 (RP300_01889) | - | 1975814..1976305 (+) | 492 | WP_048766788.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| RP300_RS09220 (RP300_01890) | - | 1976310..1977443 (+) | 1134 | WP_317849698.1 | CYTH domain-containing protein | - |
| RP300_RS09225 (RP300_01891) | pilA | 1977488..1978759 (-) | 1272 | WP_317849699.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| RP300_RS09230 (RP300_01892) | - | 1978875..1979471 (+) | 597 | WP_317849700.1 | RsmD family RNA methyltransferase | - |
| RP300_RS09235 (RP300_01893) | coaD | 1979514..1980068 (+) | 555 | WP_070475551.1 | pantetheine-phosphate adenylyltransferase | - |
| RP300_RS09240 (RP300_01894) | - | 1980091..1980354 (+) | 264 | WP_070475555.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| RP300_RS09245 (RP300_01895) | - | 1980428..1982857 (-) | 2430 | WP_317849701.1 | AsmA family protein | - |
Sequence
Protein
Download Length: 423 a.a. Molecular weight: 44442.52 Da Isoelectric Point: 4.6833
>NTDB_id=897144 RP300_RS09225 WP_317849699.1 1977488..1978759(-) (pilA) [Oligella urethralis strain MSHR-50412PR]
MFRFFKRKKAKEENQASQEAEVAQAHEQEEPAASEAIVSEKPVTTSTDTVTAETVDESAVAIERAETVAPTVESSATPAP
LEPQPEVIVTEVEAEAEASSPAPVADAEVAPSPVVTEVAPAKSSWMQRLRQGLSRTGSSIGSLFVGVKVDEALFEELEMA
LLMADAGIEATESLLAKLRTKVKQQRIEDAAEVKEALKALLSEHLKPLEKDFMLPLDGTSVVMIAGVNGAGKTTSIGKLA
HHFQAAGASVLLAAGDTFRAAAREQLVEWGKRNQVAVIAQDGGDPAAVAFDAVNAGKARKANVVMVDTAGRLPTQLHLME
ELKKIKRVINKADSEAPHEVLLVVDGNTGQNVITQIKAFDAALGLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWI
GVGESLHDLQPFSAAEFANALLG
MFRFFKRKKAKEENQASQEAEVAQAHEQEEPAASEAIVSEKPVTTSTDTVTAETVDESAVAIERAETVAPTVESSATPAP
LEPQPEVIVTEVEAEAEASSPAPVADAEVAPSPVVTEVAPAKSSWMQRLRQGLSRTGSSIGSLFVGVKVDEALFEELEMA
LLMADAGIEATESLLAKLRTKVKQQRIEDAAEVKEALKALLSEHLKPLEKDFMLPLDGTSVVMIAGVNGAGKTTSIGKLA
HHFQAAGASVLLAAGDTFRAAAREQLVEWGKRNQVAVIAQDGGDPAAVAFDAVNAGKARKANVVMVDTAGRLPTQLHLME
ELKKIKRVINKADSEAPHEVLLVVDGNTGQNVITQIKAFDAALGLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIPVYWI
GVGESLHDLQPFSAAEFANALLG
Nucleotide
Download Length: 1272 bp
>NTDB_id=897144 RP300_RS09225 WP_317849699.1 1977488..1978759(-) (pilA) [Oligella urethralis strain MSHR-50412PR]
ATGTTTAGATTTTTTAAGCGTAAAAAAGCAAAAGAAGAAAATCAAGCGAGTCAAGAAGCTGAAGTTGCGCAAGCGCATGA
GCAGGAGGAGCCTGCAGCTTCAGAAGCGATAGTATCGGAGAAGCCCGTCACCACGAGTACTGACACGGTGACGGCGGAAA
CTGTGGATGAGTCTGCCGTCGCGATAGAGCGGGCGGAGACGGTGGCGCCCACAGTTGAGTCGAGTGCCACCCCCGCGCCC
CTTGAACCGCAGCCCGAAGTGATTGTGACTGAGGTTGAAGCGGAGGCTGAGGCAAGCTCTCCGGCGCCAGTCGCTGACGC
TGAGGTGGCGCCAAGTCCAGTGGTGACTGAGGTAGCGCCAGCCAAGAGCTCTTGGATGCAGCGCTTGCGTCAGGGCCTTT
CTCGTACGGGCTCCAGCATTGGTTCACTGTTTGTGGGCGTCAAGGTTGACGAGGCCTTATTTGAAGAGCTAGAAATGGCA
TTGTTGATGGCGGATGCCGGCATTGAGGCGACCGAGTCCTTGTTAGCTAAGCTCAGAACCAAGGTTAAGCAACAGCGTAT
CGAGGATGCTGCAGAGGTTAAGGAAGCGCTTAAAGCCTTATTAAGCGAGCATTTGAAGCCCTTAGAAAAAGACTTTATGT
TGCCGTTGGATGGCACCTCAGTCGTTATGATTGCTGGCGTTAACGGTGCGGGTAAAACCACCTCCATCGGTAAGTTAGCA
CATCATTTCCAAGCCGCTGGTGCGAGTGTGTTGTTAGCCGCCGGGGATACTTTCCGAGCAGCGGCACGGGAGCAATTGGT
CGAATGGGGTAAGCGCAATCAGGTGGCGGTGATAGCGCAAGACGGCGGTGATCCAGCCGCCGTTGCCTTTGATGCGGTCA
ATGCCGGTAAAGCCCGCAAGGCCAATGTGGTGATGGTCGATACGGCCGGACGTTTGCCGACTCAATTACACTTGATGGAA
GAGCTTAAAAAGATTAAGCGGGTGATTAATAAGGCTGATAGCGAAGCGCCGCATGAGGTGTTATTAGTGGTTGATGGTAA
TACGGGCCAAAACGTGATTACTCAAATTAAGGCCTTTGATGCGGCCTTGGGCTTAACCGGTTTAGTAGTGACCAAGTTAG
ACGGCACGGCCAAGGGCGGTACCTTAGCCGCTGTGGCAGCAGGTAGCCAAGGCGTGCGACCGATTCCGGTCTATTGGATT
GGGGTTGGTGAGTCATTGCACGATCTTCAGCCTTTTTCTGCGGCTGAGTTTGCCAATGCCTTGCTTGGCTAA
ATGTTTAGATTTTTTAAGCGTAAAAAAGCAAAAGAAGAAAATCAAGCGAGTCAAGAAGCTGAAGTTGCGCAAGCGCATGA
GCAGGAGGAGCCTGCAGCTTCAGAAGCGATAGTATCGGAGAAGCCCGTCACCACGAGTACTGACACGGTGACGGCGGAAA
CTGTGGATGAGTCTGCCGTCGCGATAGAGCGGGCGGAGACGGTGGCGCCCACAGTTGAGTCGAGTGCCACCCCCGCGCCC
CTTGAACCGCAGCCCGAAGTGATTGTGACTGAGGTTGAAGCGGAGGCTGAGGCAAGCTCTCCGGCGCCAGTCGCTGACGC
TGAGGTGGCGCCAAGTCCAGTGGTGACTGAGGTAGCGCCAGCCAAGAGCTCTTGGATGCAGCGCTTGCGTCAGGGCCTTT
CTCGTACGGGCTCCAGCATTGGTTCACTGTTTGTGGGCGTCAAGGTTGACGAGGCCTTATTTGAAGAGCTAGAAATGGCA
TTGTTGATGGCGGATGCCGGCATTGAGGCGACCGAGTCCTTGTTAGCTAAGCTCAGAACCAAGGTTAAGCAACAGCGTAT
CGAGGATGCTGCAGAGGTTAAGGAAGCGCTTAAAGCCTTATTAAGCGAGCATTTGAAGCCCTTAGAAAAAGACTTTATGT
TGCCGTTGGATGGCACCTCAGTCGTTATGATTGCTGGCGTTAACGGTGCGGGTAAAACCACCTCCATCGGTAAGTTAGCA
CATCATTTCCAAGCCGCTGGTGCGAGTGTGTTGTTAGCCGCCGGGGATACTTTCCGAGCAGCGGCACGGGAGCAATTGGT
CGAATGGGGTAAGCGCAATCAGGTGGCGGTGATAGCGCAAGACGGCGGTGATCCAGCCGCCGTTGCCTTTGATGCGGTCA
ATGCCGGTAAAGCCCGCAAGGCCAATGTGGTGATGGTCGATACGGCCGGACGTTTGCCGACTCAATTACACTTGATGGAA
GAGCTTAAAAAGATTAAGCGGGTGATTAATAAGGCTGATAGCGAAGCGCCGCATGAGGTGTTATTAGTGGTTGATGGTAA
TACGGGCCAAAACGTGATTACTCAAATTAAGGCCTTTGATGCGGCCTTGGGCTTAACCGGTTTAGTAGTGACCAAGTTAG
ACGGCACGGCCAAGGGCGGTACCTTAGCCGCTGTGGCAGCAGGTAGCCAAGGCGTGCGACCGATTCCGGTCTATTGGATT
GGGGTTGGTGAGTCATTGCACGATCTTCAGCCTTTTTCTGCGGCTGAGTTTGCCAATGCCTTGCTTGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.231 |
100 |
0.513 |