Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RP300_RS07155 Genome accession   NZ_CP137240
Coordinates   1552912..1554282 (-) Length   456 a.a.
NCBI ID   WP_048767541.1    Uniprot ID   -
Organism   Oligella urethralis strain MSHR-50412PR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1547912..1559282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RP300_RS07130 (RP300_01464) - 1548000..1548911 (-) 912 WP_018026169.1 ABC transporter permease subunit -
  RP300_RS07135 (RP300_01465) - 1548908..1550029 (-) 1122 WP_102705792.1 ABC transporter ATP-binding protein -
  RP300_RS07140 (RP300_01466) - 1550136..1551233 (-) 1098 WP_018026171.1 polyamine ABC transporter substrate-binding protein -
  RP300_RS07145 (RP300_01467) - 1551298..1552065 (-) 768 WP_115020807.1 3-deoxy-D-manno-octulosonic acid kinase -
  RP300_RS07150 (RP300_01468) - 1552137..1552883 (-) 747 WP_036558397.1 sulfite exporter TauE/SafE family protein -
  RP300_RS07155 (RP300_01469) radA 1552912..1554282 (-) 1371 WP_048767541.1 DNA repair protein RadA Machinery gene
  RP300_RS07160 (RP300_01470) alr 1554290..1555444 (-) 1155 WP_115020805.1 alanine racemase -
  RP300_RS07165 (RP300_01471) - 1555653..1556543 (+) 891 WP_317849555.1 squalene/phytoene synthase family protein -
  RP300_RS07170 (RP300_01472) - 1556552..1557181 (-) 630 WP_317849556.1 flavin reductase family protein -
  RP300_RS07175 (RP300_01473) - 1557209..1557622 (-) 414 WP_018026178.1 hypothetical protein -
  RP300_RS07180 (RP300_01474) ltrA 1557716..1558993 (-) 1278 WP_048767660.1 group II intron reverse transcriptase/maturase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49346.75 Da        Isoelectric Point: 7.7545

>NTDB_id=897141 RP300_RS07155 WP_048767541.1 1552912..1554282(-) (radA) [Oligella urethralis strain MSHR-50412PR]
MAKARTIYSCQSCGGTTLRWQGQCPHCREWNTLEETREQPLSKAAVANRFEHLAASSTVRRLADVQMQDTPRMSTGLAEF
DRVLGGGLVAGSVVLIGGDPGIGKSTLLLQVLTSLSFSQNVLYVTGEESDQQVALRAKRLELNTESVQLLAEIQLEAIQR
AVAEVSPKVVVIDSIQTMFSSELTAAPGSVSQVRECAAQLTRLAKQNDIALVMIGHVTKDGSLAGPRVLEHIVDTVLYFE
GDSHSSHRLIRAFKNRFGAVNELGVFAMTDKGLRGINNPSAIFLSQHSSDIAGSCVMATQEGTRPLLVEIQALADTAHVP
NPRRLSLGLDGGRLAMLLAVLHRHGGIPTFNQDVFINAVGGVRISETASDLPVILALISSLRDKPLPKGFFAFGEVGLAG
EIRPATRGQERLKEAAKLGFEIAMIPKHNAPKQPLPGLTIWPVSRLVDIFDYLRRE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=897141 RP300_RS07155 WP_048767541.1 1552912..1554282(-) (radA) [Oligella urethralis strain MSHR-50412PR]
ATGGCAAAAGCAAGAACAATCTACAGTTGTCAATCCTGTGGTGGTACCACGCTGAGATGGCAAGGGCAATGTCCCCATTG
TCGAGAGTGGAATACCTTAGAGGAAACACGTGAACAGCCCCTTAGCAAAGCCGCTGTGGCTAATCGTTTTGAGCATTTGG
CAGCTAGCAGCACGGTGCGTCGTTTGGCTGATGTACAGATGCAGGATACGCCGCGTATGAGTACCGGCTTGGCTGAGTTT
GACCGTGTTTTGGGTGGTGGCTTAGTGGCTGGTTCGGTGGTGCTTATTGGTGGTGATCCAGGGATCGGTAAATCGACTCT
GTTACTTCAAGTATTAACTAGTTTATCCTTTAGCCAAAATGTATTGTATGTTACAGGTGAGGAATCGGATCAGCAGGTCG
CCTTACGTGCCAAGCGCTTGGAATTAAATACCGAGTCAGTACAGTTATTAGCGGAAATTCAACTGGAAGCAATTCAACGC
GCGGTGGCCGAGGTAAGTCCTAAAGTGGTTGTGATTGACTCCATTCAGACCATGTTTTCCTCGGAGCTGACCGCAGCCCC
CGGTTCAGTCTCACAGGTGCGTGAATGTGCTGCACAACTAACGCGTTTAGCAAAGCAAAACGATATAGCCTTAGTGATGA
TTGGTCATGTGACCAAGGATGGCAGTCTGGCTGGACCGCGTGTGCTGGAGCATATTGTTGACACGGTGTTATATTTTGAG
GGCGATAGTCATTCTTCGCATCGCTTGATTCGTGCTTTTAAAAACCGTTTTGGCGCGGTCAATGAATTAGGTGTTTTTGC
CATGACGGATAAGGGCTTGCGAGGCATTAATAATCCCTCGGCGATTTTCTTATCCCAGCATTCTAGTGATATTGCAGGTT
CGTGTGTGATGGCGACTCAAGAGGGCACACGTCCCTTATTGGTGGAGATTCAGGCCTTGGCCGATACTGCGCATGTACCT
AATCCTCGACGTCTTAGTCTAGGCTTGGATGGGGGACGTTTAGCTATGCTATTGGCGGTCTTACATCGGCATGGCGGTAT
CCCCACCTTTAATCAGGATGTGTTTATTAATGCCGTGGGCGGGGTCCGTATCAGTGAAACTGCTTCCGACTTGCCGGTGA
TTTTGGCGTTAATTTCTTCTTTGCGTGATAAACCACTGCCCAAGGGCTTTTTTGCTTTTGGTGAGGTAGGTTTAGCTGGT
GAAATTCGACCCGCCACCCGTGGCCAGGAGCGCCTTAAAGAAGCCGCAAAATTAGGCTTTGAAATTGCCATGATCCCTAA
GCATAATGCACCGAAGCAGCCACTGCCGGGACTGACTATTTGGCCAGTTTCTCGTCTTGTTGATATTTTTGACTATTTAA
GAAGAGAGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.459

95.614

0.482
  radA Streptococcus pneumoniae Rx1

46.911

95.833

0.45
  radA Streptococcus pneumoniae D39

46.911

95.833

0.45
  radA Streptococcus pneumoniae R6

46.911

95.833

0.45
  radA Streptococcus pneumoniae TIGR4

46.911

95.833

0.45
  radA Streptococcus mitis SK321

47.209

94.298

0.445
  radA Streptococcus mitis NCTC 12261

47.209

94.298

0.445