Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   LDM85_RS00650 Genome accession   NZ_AP024963
Coordinates   140397..141710 (+) Length   437 a.a.
NCBI ID   WP_223887602.1    Uniprot ID   -
Organism   Helicobacter pylori strain #5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 135397..146710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM85_RS00630 (OHP005_01270) crdR 135723..136364 (+) 642 WP_001169802.1 copper response regulator transcription factor CrdR -
  LDM85_RS00635 (OHP005_01280) crdS 136330..137532 (+) 1203 WP_080000728.1 copper-sensing histidine kinase CrdS -
  LDM85_RS00640 (OHP005_01290) - 137535..138929 (+) 1395 WP_223887600.1 NAD(P)H-hydrate dehydratase -
  LDM85_RS00645 (OHP005_01300) - 138940..140400 (+) 1461 WP_223887601.1 replicative DNA helicase -
  LDM85_RS00650 (OHP005_01310) comEC/comE3 140397..141710 (+) 1314 WP_223887602.1 ComEC/Rec2 family competence protein Machinery gene
  LDM85_RS00655 (OHP005_01320) mqnP 141739..142623 (+) 885 WP_223887603.1 menaquinone biosynthesis prenyltransferase MqnP -
  LDM85_RS00660 (OHP005_01330) - 142616..143110 (+) 495 WP_014537179.1 hypothetical protein -
  LDM85_RS00665 (OHP005_01340) - 143123..143626 (+) 504 WP_223887604.1 DUF6115 domain-containing protein -
  LDM85_RS00670 (OHP005_01350) - 143623..144429 (+) 807 WP_223887605.1 phosphatidylserine decarboxylase -
  LDM85_RS00675 (OHP005_01360) nadA 144416..145426 (+) 1011 WP_001141985.1 quinolinate synthase NadA -
  LDM85_RS00680 (OHP005_01370) nadC 145426..146247 (+) 822 WP_223887606.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50212.19 Da        Isoelectric Point: 9.8173

>NTDB_id=89706 LDM85_RS00650 WP_223887602.1 140397..141710(+) (comEC/comE3) [Helicobacter pylori strain #5]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRYFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSHYQLFSIPLGLIFVVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=89706 LDM85_RS00650 WP_223887602.1 140397..141710(+) (comEC/comE3) [Helicobacter pylori strain #5]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCTATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGAGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAGCACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCACTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATAGCA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTACATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943

Multiple sequence alignment