Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | LDM85_RS00270 | Genome accession | NZ_AP024963 |
| Coordinates | 60669..61244 (+) | Length | 191 a.a. |
| NCBI ID | WP_223887572.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain #5 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 55669..66244
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDM85_RS00245 (OHP005_00490) | uvrD | 56360..58405 (+) | 2046 | WP_223887568.1 | DNA helicase UvrD | - |
| LDM85_RS00250 (OHP005_00500) | flgA | 58402..59058 (+) | 657 | WP_223887569.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| LDM85_RS00255 (OHP005_00510) | - | 59068..59631 (+) | 564 | WP_223887570.1 | UbiX family flavin prenyltransferase | - |
| LDM85_RS00260 (OHP005_00520) | coaD | 59631..60104 (+) | 474 | WP_001169259.1 | pantetheine-phosphate adenylyltransferase | - |
| LDM85_RS00265 (OHP005_00530) | tmk | 60106..60681 (+) | 576 | WP_223887571.1 | dTMP kinase | - |
| LDM85_RS00270 (OHP005_00540) | comFC | 60669..61244 (+) | 576 | WP_223887572.1 | ComF family protein | Machinery gene |
| LDM85_RS00275 (OHP005_00550) | - | 61277..63316 (+) | 2040 | WP_223887573.1 | class I SAM-dependent DNA methyltransferase | - |
| LDM85_RS00280 (OHP005_00560) | - | 63313..63966 (+) | 654 | WP_223887574.1 | restriction endonuclease subunit S | - |
| LDM85_RS00285 (OHP005_00570) | - | 63993..64550 (+) | 558 | WP_223887575.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21340.93 Da Isoelectric Point: 8.9399
>NTDB_id=89705 LDM85_RS00270 WP_223887572.1 60669..61244(+) (comFC) [Helicobacter pylori strain #5]
MCCLTCLKLSFKPLCSNCLNDLPLKLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MCCLTCLKLSFKPLCSNCLNDLPLKLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRANNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=89705 LDM85_RS00270 WP_223887572.1 60669..61244(+) (comFC) [Helicobacter pylori strain #5]
ATGTGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAAATTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCTTACAAGAACAGGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCCTAG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
ATGTGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAAATTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCTTACAAGAACAGGGC
TTGAATACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCTGGGAAAAGCCTAG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCCCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
94.764 |
100 |
0.948 |