Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABC799_RS10780 Genome accession   NZ_CP155534
Coordinates   2080963..2081733 (-) Length   256 a.a.
NCBI ID   WP_000616167.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain DCC1476     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2075963..2086733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC799_RS10740 (ABC799_10740) - 2076480..2076776 (-) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -
  ABC799_RS10745 (ABC799_10745) comR 2077319..2078212 (-) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  ABC799_RS10750 (ABC799_10750) - 2078233..2078427 (-) 195 WP_000756776.1 hypothetical protein -
  ABC799_RS10755 (ABC799_10755) - 2078838..2078963 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  ABC799_RS10760 (ABC799_10760) blpU 2078966..2079196 (-) 231 WP_001093487.1 bacteriocin-like peptide BlpU -
  ABC799_RS10765 (ABC799_10765) - 2079399..2079689 (-) 291 Protein_2085 transposase family protein -
  ABC799_RS10770 (ABC799_10770) - 2079735..2079968 (-) 234 WP_000136447.1 acyl carrier protein -
  ABC799_RS10775 (ABC799_10775) plsX 2079974..2080966 (-) 993 WP_000717453.1 phosphate acyltransferase PlsX -
  ABC799_RS10780 (ABC799_10780) recO 2080963..2081733 (-) 771 WP_000616167.1 DNA repair protein RecO Machinery gene
  ABC799_RS10785 (ABC799_10785) - 2081730..2082899 (-) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  ABC799_RS10790 (ABC799_10790) - 2083048..2084058 (+) 1011 WP_000009158.1 YeiH family protein -
  ABC799_RS10795 (ABC799_10795) - 2084087..2084605 (-) 519 WP_000693129.1 hypothetical protein -
  ABC799_RS10800 (ABC799_10800) - 2084646..2085083 (-) 438 WP_000076479.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.8959

>NTDB_id=896993 ABC799_RS10780 WP_000616167.1 2080963..2081733(-) (recO) [Streptococcus pneumoniae strain DCC1476]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQNLTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=896993 ABC799_RS10780 WP_000616167.1 2080963..2081733(-) (recO) [Streptococcus pneumoniae strain DCC1476]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAAATTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988