Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   ABC799_RS05490 Genome accession   NZ_CP155534
Coordinates   1017896..1018360 (+) Length   154 a.a.
NCBI ID   WP_001135781.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain DCC1476     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1012896..1023360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC799_RS05470 (ABC799_05470) dhaM 1014890..1015264 (+) 375 WP_000443793.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  ABC799_RS05475 (ABC799_05475) - 1015723..1016436 (+) 714 WP_000499433.1 YjjG family noncanonical pyrimidine nucleotidase -
  ABC799_RS05480 (ABC799_05480) - 1016450..1017097 (+) 648 WP_001810198.1 hypothetical protein -
  ABC799_RS05485 (ABC799_05485) - 1017233..1017886 (+) 654 WP_000401326.1 uracil-DNA glycosylase -
  ABC799_RS05490 (ABC799_05490) mutX 1017896..1018360 (+) 465 WP_001135781.1 8-oxo-dGTP diphosphatase Machinery gene
  ABC799_RS05495 (ABC799_05495) - 1018373..1019641 (+) 1269 WP_000924469.1 dihydroorotase -
  ABC799_RS05500 (ABC799_05500) - 1019655..1019915 (+) 261 WP_001105925.1 hypothetical protein -
  ABC799_RS05505 (ABC799_05505) pdrM 1019926..1021287 (+) 1362 WP_000278524.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  ABC799_RS05510 (ABC799_05510) - 1021441..1022409 (+) 969 WP_000105360.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17842.19 Da        Isoelectric Point: 4.2287

>NTDB_id=896948 ABC799_RS05490 WP_001135781.1 1017896..1018360(+) (mutX) [Streptococcus pneumoniae strain DCC1476]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECATREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=896948 ABC799_RS05490 WP_001135781.1 1017896..1018360(+) (mutX) [Streptococcus pneumoniae strain DCC1476]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGACGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGATGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.701

100

0.987