Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ABC799_RS05255 Genome accession   NZ_CP155534
Coordinates   971321..972130 (+) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain DCC1476     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 966321..977130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC799_RS05235 (ABC799_05235) - 967820..967945 (-) 126 WP_001818232.1 hypothetical protein -
  ABC799_RS05240 (ABC799_05240) mutY 968042..969217 (+) 1176 WP_000886152.1 A/G-specific adenine glycosylase -
  ABC799_RS05245 (ABC799_05245) yycF 969273..969977 (+) 705 WP_000722076.1 response regulator YycF -
  ABC799_RS05250 (ABC799_05250) micB 969970..971319 (+) 1350 WP_000886213.1 cell wall metabolism sensor histidine kinase VicK Regulator
  ABC799_RS05255 (ABC799_05255) vicX 971321..972130 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  ABC799_RS05260 (ABC799_05260) - 972194..973450 (-) 1257 WP_000530078.1 ISL3 family transposase -
  ABC799_RS05265 (ABC799_05265) relB 973644..973886 (+) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  ABC799_RS05270 (ABC799_05270) - 973888..974142 (+) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ABC799_RS05275 (ABC799_05275) - 974189..974932 (+) 744 Protein_993 ion channel -
  ABC799_RS05280 (ABC799_05280) - 975221..976207 (-) 987 WP_000204727.1 L-lactate dehydrogenase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=896945 ABC799_RS05255 WP_001289493.1 971321..972130(+) (vicX) [Streptococcus pneumoniae strain DCC1476]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=896945 ABC799_RS05255 WP_001289493.1 971321..972130(+) (vicX) [Streptococcus pneumoniae strain DCC1476]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTGGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGCAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACTTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773