Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R3O66_RS11945 Genome accession   NZ_CP137209
Coordinates   2342724..2343695 (-) Length   323 a.a.
NCBI ID   WP_025905417.1    Uniprot ID   A0AAJ4SJJ8
Organism   Mammaliicoccus sciuri strain 9VPs_Sm2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2344387..2370218 2342724..2343695 flank 692


Gene organization within MGE regions


Location: 2342724..2370218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R3O66_RS11945 (R3O66_11945) ceuB 2342724..2343695 (-) 972 WP_025905417.1 ABC transporter permease Machinery gene
  R3O66_RS11950 (R3O66_11950) - 2343821..2344237 (-) 417 WP_058612032.1 FixH family protein -
  R3O66_RS11955 (R3O66_11955) nrdF 2344387..2345358 (-) 972 WP_048539937.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  R3O66_RS11960 (R3O66_11960) nrdE 2345387..2347492 (-) 2106 WP_227531835.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  R3O66_RS11965 (R3O66_11965) nrdI 2347455..2347853 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  R3O66_RS11970 (R3O66_11970) - 2348228..2349112 (+) 885 WP_048539939.1 DMT family transporter -
  R3O66_RS11975 (R3O66_11975) queF 2349112..2349612 (+) 501 WP_048539940.1 preQ(1) synthase -
  R3O66_RS11980 (R3O66_11980) - 2349906..2351420 (+) 1515 WP_048539941.1 peptide MFS transporter -
  R3O66_RS11985 (R3O66_11985) - 2351766..2353268 (+) 1503 WP_048539942.1 peptide MFS transporter -
  R3O66_RS11990 (R3O66_11990) - 2353308..2353889 (-) 582 WP_048539943.1 5'-3'-deoxyribonucleotidase -
  R3O66_RS11995 (R3O66_11995) hisC 2353954..2355021 (-) 1068 WP_065380988.1 histidinol-phosphate transaminase -
  R3O66_RS12000 (R3O66_12000) - 2355124..2356638 (-) 1515 WP_227531836.1 ABC transporter permease/substrate-binding protein -
  R3O66_RS12005 (R3O66_12005) - 2356635..2357597 (-) 963 WP_201101384.1 ABC transporter ATP-binding protein -
  R3O66_RS12010 (R3O66_12010) recQ 2357687..2359465 (-) 1779 WP_048539947.1 DNA helicase RecQ -
  R3O66_RS12015 (R3O66_12015) - 2359488..2361359 (-) 1872 WP_058611505.1 ABC-F family ATP-binding cassette domain-containing protein -
  R3O66_RS12020 (R3O66_12020) - 2361445..2362260 (+) 816 WP_037588700.1 ZIP family metal transporter -
  R3O66_RS12025 (R3O66_12025) ltaS 2362866..2364806 (-) 1941 WP_049319712.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  R3O66_RS12030 (R3O66_12030) - 2365007..2366011 (-) 1005 WP_206543165.1 biotin-dependent carboxyltransferase family protein -
  R3O66_RS12035 (R3O66_12035) - 2366002..2366703 (-) 702 WP_049319710.1 carboxyltransferase domain-containing protein -
  R3O66_RS12040 (R3O66_12040) - 2366744..2366956 (-) 213 WP_049319709.1 hypothetical protein -
  R3O66_RS12045 (R3O66_12045) - 2367018..2368766 (-) 1749 WP_206543166.1 bifunctional anthranilate synthase component I family protein/class IV aminotransferase -
  R3O66_RS12050 (R3O66_12050) - 2368744..2369346 (-) 603 WP_058611509.1 aminodeoxychorismate/anthranilate synthase component II -
  R3O66_RS12055 (R3O66_12055) queC 2369550..2370218 (+) 669 WP_058611510.1 7-cyano-7-deazaguanine synthase QueC -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35476.97 Da        Isoelectric Point: 10.7243

>NTDB_id=896904 R3O66_RS11945 WP_025905417.1 2342724..2343695(-) (ceuB) [Mammaliicoccus sciuri strain 9VPs_Sm2]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=896904 R3O66_RS11945 WP_025905417.1 2342724..2343695(-) (ceuB) [Mammaliicoccus sciuri strain 9VPs_Sm2]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTGATTATTTTATTAGTAATTGCAACGTTCTTCTCTATATTTATAGGTGT
TTCAGAAGTAAAACCATTACATATATTAAATTTAACAGACGAACAGAAGAACATTTTAGTATCAAGTAGAATTCCAAGAA
CAGTCAGTATTATTATTTCAGGTAGCTCGTTAGCTATTTGTGGACTGATTATGCAACAGCTTACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCCAGATTAGGTATATTAATTTCTCTTATCGCTTTTCCAGAAGCCAACAT
ACTACTTAAATTATTATTTGCTACATTATTAAGTTTATTTGGAACAATGCTATTCATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCATTAGTTGGTATTATGCTCGGAAACATAGTGTCAAGTTTTTCATCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
TTATATTAGTATTCCGTTATTGATTTTAGCATTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTTA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGACTGATTATTGCCTCAATCATTACGGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGTTTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTAAAAAA
TGCATTGCCGCATACAGCTGTATTTGGTGCATTGTTTGTTATGATTTGTGATGTAATAGGTCGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATTGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.104

98.142

0.502