Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   LDM86_RS00605 Genome accession   NZ_AP024962
Coordinates   121417..122730 (+) Length   437 a.a.
NCBI ID   WP_223889234.1    Uniprot ID   -
Organism   Helicobacter pylori strain #3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116417..127730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDM86_RS00580 (OHP003_01160) - 116427..116651 (+) 225 Protein_111 type II restriction endonuclease -
  LDM86_RS00585 (OHP003_01170) crdR 116739..117380 (+) 642 WP_001169808.1 copper response regulator transcription factor CrdR -
  LDM86_RS00590 (OHP003_01180) crdS 117346..118548 (+) 1203 WP_223889570.1 copper-sensing histidine kinase CrdS -
  LDM86_RS00595 (OHP003_01190) - 118551..119951 (+) 1401 WP_223889232.1 NAD(P)H-hydrate dehydratase -
  LDM86_RS00600 (OHP003_01200) - 119954..121420 (+) 1467 WP_223889233.1 replicative DNA helicase -
  LDM86_RS00605 (OHP003_01210) comEC/comE3 121417..122730 (+) 1314 WP_223889234.1 ComEC/Rec2 family competence protein Machinery gene
  LDM86_RS00610 (OHP003_01220) mqnP 122801..123643 (+) 843 WP_263421591.1 menaquinone biosynthesis prenyltransferase MqnP -
  LDM86_RS00615 (OHP003_01230) - 123636..124130 (+) 495 WP_223889235.1 hypothetical protein -
  LDM86_RS00620 (OHP003_01240) - 124143..124646 (+) 504 WP_000953083.1 DUF6115 domain-containing protein -
  LDM86_RS00625 (OHP003_01250) - 124643..125446 (+) 804 WP_223889236.1 phosphatidylserine decarboxylase -
  LDM86_RS00630 (OHP003_01260) nadA 125436..126446 (+) 1011 WP_223889237.1 quinolinate synthase NadA -
  LDM86_RS00635 (OHP003_01270) nadC 126446..127267 (+) 822 WP_223889238.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50003.89 Da        Isoelectric Point: 9.8572

>NTDB_id=89688 LDM86_RS00605 WP_223889234.1 121417..122730(+) (comEC/comE3) [Helicobacter pylori strain #3]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVPSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=89688 LDM86_RS00605 WP_223889234.1 121417..122730(+) (comEC/comE3) [Helicobacter pylori strain #3]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGTTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCACGATCTTTTCAAGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTCTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952

Multiple sequence alignment