Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R5Q20_RS14780 Genome accession   NZ_CP137207
Coordinates   3018922..3019536 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain F3321     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3013922..3024536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Q20_RS14765 (R5Q20_14760) helD 3014146..3016200 (-) 2055 WP_128299003.1 DNA helicase IV -
  R5Q20_RS14770 (R5Q20_14765) - 3016326..3016772 (+) 447 WP_003035892.1 YccF domain-containing protein -
  R5Q20_RS14775 (R5Q20_14770) yccS 3016791..3018944 (+) 2154 WP_032941200.1 YccS family putative transporter -
  R5Q20_RS14780 (R5Q20_14775) sxy/tfoX 3018922..3019536 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  R5Q20_RS14785 (R5Q20_14780) sulA 3019754..3020263 (+) 510 WP_032948945.1 SOS-induced cell division inhibitor SulA -
  R5Q20_RS14790 (R5Q20_14785) ompA 3020621..3021679 (+) 1059 WP_003836839.1 porin OmpA -
  R5Q20_RS14795 (R5Q20_14790) matP 3021769..3022221 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  R5Q20_RS14800 (R5Q20_14795) - 3022407..3024167 (+) 1761 WP_071697311.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=896846 R5Q20_RS14780 WP_003035889.1 3018922..3019536(-) (sxy/tfoX) [Citrobacter freundii strain F3321]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=896846 R5Q20_RS14780 WP_003035889.1 3018922..3019536(-) (sxy/tfoX) [Citrobacter freundii strain F3321]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACAATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACACGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686