Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R4T23_RS15085 Genome accession   NZ_CP137203
Coordinates   3136826..3137440 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain F2613     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3131826..3142440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4T23_RS15070 (R4T23_15065) helD 3132050..3134104 (-) 2055 WP_179154201.1 DNA helicase IV -
  R4T23_RS15075 (R4T23_15070) - 3134230..3134676 (+) 447 WP_003035892.1 YccF domain-containing protein -
  R4T23_RS15080 (R4T23_15075) yccS 3134695..3136848 (+) 2154 WP_032939270.1 YccS family putative transporter -
  R4T23_RS15085 (R4T23_15080) sxy/tfoX 3136826..3137440 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  R4T23_RS15090 (R4T23_15085) sulA 3137657..3138166 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  R4T23_RS15095 (R4T23_15090) ompA 3138524..3139570 (+) 1047 WP_003035883.1 porin OmpA -
  R4T23_RS15100 (R4T23_15095) matP 3139660..3140112 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  R4T23_RS15105 (R4T23_15100) - 3140298..3142058 (+) 1761 WP_162648468.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=896823 R4T23_RS15085 WP_003035889.1 3136826..3137440(-) (sxy/tfoX) [Citrobacter freundii strain F2613]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=896823 R4T23_RS15085 WP_003035889.1 3136826..3137440(-) (sxy/tfoX) [Citrobacter freundii strain F2613]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686