Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ABC814_RS07610 Genome accession   NZ_CP155533
Coordinates   1479244..1479966 (-) Length   240 a.a.
NCBI ID   WP_050210506.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Spn1439-106     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474244..1484966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC814_RS07600 (ABC814_07605) - 1476818..1477984 (-) 1167 WP_000521384.1 MalY/PatB family protein -
  ABC814_RS07605 (ABC814_07610) - 1477992..1479086 (-) 1095 WP_000031968.1 cystathionine gamma-synthase -
  ABC814_RS07610 (ABC814_07615) rcrP 1479244..1479966 (-) 723 WP_050210506.1 ATP-binding cassette domain-containing protein Regulator
  ABC814_RS07615 (ABC814_07620) - 1480153..1480919 (-) 767 Protein_1507 ABC transporter transmembrane domain-containing protein -
  ABC814_RS07620 (ABC814_07625) amiA 1481091..1483049 (-) 1959 WP_000748873.1 peptide ABC transporter substrate-binding protein Regulator
  ABC814_RS07625 (ABC814_07630) - 1483252..1484874 (-) 1623 WP_000017807.1 polysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27214.13 Da        Isoelectric Point: 5.4335

>NTDB_id=896817 ABC814_RS07610 WP_050210506.1 1479244..1479966(-) (rcrP) [Streptococcus pneumoniae strain Spn1439-106]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGYILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGRSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=896817 ABC814_RS07610 WP_050210506.1 1479244..1479966(-) (rcrP) [Streptococcus pneumoniae strain Spn1439-106]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGATATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCGAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTACTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

36.82

99.583

0.367
  rcrQ Streptococcus mutans UA159

36.25

100

0.363
  comA Streptococcus mitis SK321

37.179

97.5

0.362