Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R5Q27_RS17240 Genome accession   NZ_CP137201
Coordinates   3270106..3270720 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain F3221     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3265106..3275720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Q27_RS17225 (R5Q27_17225) helD 3265330..3267384 (-) 2055 WP_102191186.1 DNA helicase IV -
  R5Q27_RS17230 (R5Q27_17230) - 3267510..3267956 (+) 447 WP_003035892.1 YccF domain-containing protein -
  R5Q27_RS17235 (R5Q27_17235) yccS 3267975..3270128 (+) 2154 WP_032939270.1 YccS family putative transporter -
  R5Q27_RS17240 (R5Q27_17240) sxy/tfoX 3270106..3270720 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  R5Q27_RS17245 (R5Q27_17245) sulA 3270937..3271446 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  R5Q27_RS17250 (R5Q27_17250) ompA 3271804..3272850 (+) 1047 WP_003035883.1 porin OmpA -
  R5Q27_RS17255 (R5Q27_17255) matP 3272940..3273392 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  R5Q27_RS17260 (R5Q27_17260) - 3273578..3275338 (+) 1761 WP_003035878.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=896800 R5Q27_RS17240 WP_003035889.1 3270106..3270720(-) (sxy/tfoX) [Citrobacter freundii strain F3221]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=896800 R5Q27_RS17240 WP_003035889.1 3270106..3270720(-) (sxy/tfoX) [Citrobacter freundii strain F3221]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGACTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686