Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R4T16_RS15555 Genome accession   NZ_CP137183
Coordinates   3168264..3168878 (-) Length   204 a.a.
NCBI ID   WP_071681457.1    Uniprot ID   -
Organism   Citrobacter freundii strain F1917     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3163264..3173878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4T16_RS15540 (R4T16_15525) helD 3163488..3165542 (-) 2055 WP_044700756.1 DNA helicase IV -
  R4T16_RS15545 (R4T16_15530) - 3165668..3166114 (+) 447 WP_003035892.1 YccF domain-containing protein -
  R4T16_RS15550 (R4T16_15535) yccS 3166133..3168286 (+) 2154 WP_032941200.1 YccS family putative transporter -
  R4T16_RS15555 (R4T16_15540) sxy/tfoX 3168264..3168878 (-) 615 WP_071681457.1 TfoX/Sxy family DNA transformation protein Regulator
  R4T16_RS15560 (R4T16_15545) sulA 3169096..3169605 (+) 510 WP_032936288.1 SOS-induced cell division inhibitor SulA -
  R4T16_RS15565 (R4T16_15550) ompA 3169963..3171021 (+) 1059 WP_003836839.1 porin OmpA -
  R4T16_RS15570 (R4T16_15555) matP 3171113..3171565 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  R4T16_RS15575 (R4T16_15560) - 3171751..3173511 (+) 1761 WP_003035878.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23238.68 Da        Isoelectric Point: 8.6049

>NTDB_id=896753 R4T16_RS15555 WP_071681457.1 3168264..3168878(-) (sxy/tfoX) [Citrobacter freundii strain F1917]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGIMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=896753 R4T16_RS15555 WP_071681457.1 3168264..3168878(-) (sxy/tfoX) [Citrobacter freundii strain F1917]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATTTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGGGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCAAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGCATTAAAGATGAGGGGATTATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686