Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABC810_RS10855 Genome accession   NZ_CP155532
Coordinates   2143371..2144141 (-) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain SP264     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2138371..2149141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC810_RS10825 (ABC810_10830) comA 2138506..2140659 (-) 2154 WP_000668272.1 peptide cleavage/export ABC transporter ComA Regulator
  ABC810_RS10830 (ABC810_10835) - 2141246..2141371 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  ABC810_RS10835 (ABC810_10840) blpU 2141374..2141604 (-) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  ABC810_RS10840 (ABC810_10845) - 2141806..2142097 (-) 292 Protein_2101 IS5/IS1182 family transposase -
  ABC810_RS10845 (ABC810_10850) - 2142143..2142376 (-) 234 WP_000136449.1 acyl carrier protein -
  ABC810_RS10850 (ABC810_10855) plsX 2142382..2143374 (-) 993 WP_000717451.1 phosphate acyltransferase PlsX -
  ABC810_RS10855 (ABC810_10860) recO 2143371..2144141 (-) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  ABC810_RS10860 (ABC810_10865) - 2144138..2145307 (-) 1170 WP_000366348.1 pyridoxal phosphate-dependent aminotransferase -
  ABC810_RS10865 (ABC810_10870) - 2145456..2146466 (+) 1011 WP_000009180.1 YeiH family protein -
  ABC810_RS10870 (ABC810_10875) - 2146485..2146700 (-) 216 WP_001814139.1 hypothetical protein -
  ABC810_RS10875 (ABC810_10880) - 2146741..2147178 (-) 438 WP_000076479.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=896752 ABC810_RS10855 WP_000616164.1 2143371..2144141(-) (recO) [Streptococcus pneumoniae strain SP264]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=896752 ABC810_RS10855 WP_000616164.1 2143371..2144141(-) (recO) [Streptococcus pneumoniae strain SP264]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992