Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   R2X23_RS15175 Genome accession   NZ_CP137166
Coordinates   3115251..3115865 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain F418     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3110251..3120865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2X23_RS15160 (R2X23_15160) helD 3110475..3112529 (-) 2055 WP_019076416.1 DNA helicase IV -
  R2X23_RS15165 (R2X23_15165) - 3112655..3113101 (+) 447 WP_016152485.1 YccF domain-containing protein -
  R2X23_RS15170 (R2X23_15170) yccS 3113120..3115273 (+) 2154 WP_115191211.1 YccS family putative transporter -
  R2X23_RS15175 (R2X23_15175) sxy/tfoX 3115251..3115865 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  R2X23_RS15180 (R2X23_15180) sulA 3116082..3116591 (+) 510 WP_046275730.1 SOS-induced cell division inhibitor SulA -
  R2X23_RS15185 (R2X23_15185) ompA 3116949..3118007 (+) 1059 WP_046275731.1 porin OmpA -
  R2X23_RS15190 (R2X23_15190) matP 3118106..3118558 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  R2X23_RS15195 (R2X23_15195) - 3118744..3120504 (+) 1761 WP_284201271.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=896662 R2X23_RS15175 WP_016152483.1 3115251..3115865(-) (sxy/tfoX) [Citrobacter braakii strain F418]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=896662 R2X23_RS15175 WP_016152483.1 3115251..3115865(-) (sxy/tfoX) [Citrobacter braakii strain F418]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTAGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATTTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGCTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681