Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ABC803_RS10625 Genome accession   NZ_CP155531
Coordinates   2050785..2051555 (-) Length   256 a.a.
NCBI ID   WP_000616166.1    Uniprot ID   Q8DRN4
Organism   Streptococcus pneumoniae strain SN36255     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2045785..2056555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC803_RS10595 (ABC803_10595) comA 2045920..2048073 (-) 2154 WP_000668291.1 peptide cleavage/export ABC transporter ComA Regulator
  ABC803_RS10600 (ABC803_10600) - 2048660..2048785 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  ABC803_RS10605 (ABC803_10605) blpU 2048788..2049018 (-) 231 WP_001093071.1 bacteriocin-like peptide BlpU -
  ABC803_RS10610 (ABC803_10610) - 2049221..2049511 (-) 291 Protein_2055 IS5/IS1182 family transposase -
  ABC803_RS10615 (ABC803_10615) - 2049557..2049790 (-) 234 WP_000136447.1 acyl carrier protein -
  ABC803_RS10620 (ABC803_10620) plsX 2049796..2050788 (-) 993 WP_000717456.1 phosphate acyltransferase PlsX -
  ABC803_RS10625 (ABC803_10625) recO 2050785..2051555 (-) 771 WP_000616166.1 DNA repair protein RecO Machinery gene
  ABC803_RS10630 (ABC803_10630) - 2051552..2052721 (-) 1170 WP_000366375.1 pyridoxal phosphate-dependent aminotransferase -
  ABC803_RS10635 (ABC803_10635) - 2052870..2053880 (+) 1011 WP_000009178.1 YeiH family protein -
  ABC803_RS10640 (ABC803_10640) - 2053909..2054112 (-) 204 WP_363780763.1 hypothetical protein -
  ABC803_RS10645 (ABC803_10645) - 2054153..2054590 (-) 438 WP_000076479.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29818.32 Da        Isoelectric Point: 5.3615

>NTDB_id=896633 ABC803_RS10625 WP_000616166.1 2050785..2051555(-) (recO) [Streptococcus pneumoniae strain SN36255]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGTCLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=896633 ABC803_RS10625 WP_000616166.1 2050785..2051555(-) (recO) [Streptococcus pneumoniae strain SN36255]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAACCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DRN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

100

100

1