Detailed information NTG0896509

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABD372_RS23575
• Genome accession: NZ_CP155528
• Coordinates: 4834996..4836021 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 3-72
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4829996..4841021

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABD372_RS23555 (ABD372_23540)	metJ	4831181..4831498 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
ABD372_RS23560 (ABD372_23545)	yiiX	4831558..4832166 (+)	609	WP_021531743.1	YiiX family permuted papain-like enzyme	-
ABD372_RS23565 (ABD372_23550)	rpmE	4832227..4832439 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
ABD372_RS23570 (ABD372_23555)	priA	4832642..4834840 (+)	2199	WP_001314329.1	primosomal protein N'	Machinery gene
ABD372_RS23575 (ABD372_23560)	cytR	4834996..4836021 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ABD372_RS23580 (ABD372_23565)	ftsN	4836113..4837072 (+)	960	WP_000068847.1	cell division protein FtsN	-
ABD372_RS23585 (ABD372_23570)	hslV	4837165..4837695 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ABD372_RS23590 (ABD372_23575)	hslU	4837705..4839036 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
ABD372_RS23595 (ABD372_23580)	menA	4839103..4840029 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABD372_RS23600 (ABD372_23585)	rraA	4840122..4840607 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ABD372_RS23605 (ABD372_23590)	zapB	4840692..4840937 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=896509 ABD372_RS23575 WP_000644904.1 4834996..4836021(+) (cytR) [Escherichia coli strain 3-72]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=896509 ABD372_RS23575 WP_000644904.1 4834996..4836021(+) (cytR) [Escherichia coli strain 3-72]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACTCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCACAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGTGATGTGATGGCGCTCGGCGCACTTTCGCAGGCAAAACGCCA
GGGGCTAAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628