Detailed information NTG0896482

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: R4B61_RS07380
• Genome accession: NZ_CP137138
• Coordinates: 1488445..1489827 (-)
• Length: 460 a.a.
• NCBI ID: WP_413627610.1
• Uniprot ID: -
• Organism: Fructilactobacillus vespulae strain Mu01
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1483445..1494827

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R4B61_RS07360 (R4B61_07330)	rlmB	1484188..1484940 (-)	753	WP_413627606.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
R4B61_RS07365 (R4B61_07335)	-	1484930..1485355 (-)	426	WP_413627607.1	Mini-ribonuclease 3	-
R4B61_RS07370 (R4B61_07340)	cysS	1485359..1486774 (-)	1416	WP_413627608.1	cysteine--tRNA ligase	-
R4B61_RS07375 (R4B61_07345)	gltX	1486877..1488370 (-)	1494	WP_413627609.1	glutamate--tRNA ligase	-
R4B61_RS07380 (R4B61_07350)	radA	1488445..1489827 (-)	1383	WP_413627610.1	DNA repair protein RadA	Machinery gene
R4B61_RS07385 (R4B61_07355)	-	1489840..1490379 (-)	540	WP_413627611.1	dUTP diphosphatase	-
R4B61_RS07390 (R4B61_07360)	rpiA	1490528..1491214 (+)	687	WP_413627612.1	ribose-5-phosphate isomerase RpiA	-
R4B61_RS07395 (R4B61_07365)	-	1491251..1492585 (+)	1335	WP_413627613.1	aminopeptidase C	-
R4B61_RS07400 (R4B61_07370)	-	1492622..1493662 (-)	1041	WP_413627614.1	WxL protein host-binding domain-containing protein	-
R4B61_RS07405 (R4B61_07375)	-	1493758..1494432 (-)	675	WP_413627615.1	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 49942.29 Da
• Isoelectric Point: 6.4045

>NTDB_id=896482 R4B61_RS07380 WP_413627610.1 1488445..1489827(-) (radA) [Fructilactobacillus vespulae strain Mu01]
MAKVKTKFVCSNCGDVSPTYLGRCPNCGEWNTFVEEIVQKNDGEAGSVSRVSFDGQKSKPQLIDTVDAHDAPRYKVPSNE
LNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLSQLGKKVLYVTGEESADQVKMRADRLKINKNDQLYVFPETDMTA
VRESIANLKPDVVIIDSVQTMQESEVTSAIGSVSQVRGVTADLMNIAKTNNITIFVVGHVTKGGAIAGPKTLEHMVDTVL
YFEGDKHHSYRLLRAVKNRFGSTNELGIFEMIDTGLKEVQNPSEIFLEERLHNATGSAIVVAMEGTRPILVELQALITPS
VFGNAQRTATGVDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLVEPAIDLAMAISIASSYEDVSTNPKECYIGELG
LTGEIRRVDRIEQRIREADKLGFSRVVVPKHNLDGLQLNSEIEIVGVTTIREALKLSLPK

Nucleotide

• Length: 1383 bp

>NTDB_id=896482 R4B61_RS07380 WP_413627610.1 1488445..1489827(-) (radA) [Fructilactobacillus vespulae strain Mu01]
ATGGCAAAAGTAAAAACTAAGTTTGTTTGTTCTAACTGTGGCGATGTTTCACCGACTTATTTGGGTCGGTGTCCTAACTG
TGGTGAGTGGAATACTTTTGTTGAAGAAATAGTACAGAAAAATGACGGTGAAGCTGGTAGCGTTTCGCGGGTTTCGTTTG
ACGGACAAAAGTCGAAGCCACAACTAATTGATACAGTTGATGCCCACGATGCACCGCGCTATAAAGTTCCTTCAAATGAG
TTAAACCGAGTTTTAGGTGGCGGAGTGGTTCCGGGATCTTTGGTATTAATTGGTGGAGACCCAGGAATTGGGAAATCAAC
GTTGTTGTTACAGGTCTCTGGACAGCTTAGCCAGCTGGGTAAAAAAGTTCTATATGTAACTGGTGAAGAGAGCGCTGATC
AGGTCAAAATGAGAGCAGATCGGTTGAAAATTAATAAAAATGATCAACTATACGTTTTCCCAGAAACTGATATGACTGCG
GTACGTGAATCGATTGCTAATTTAAAACCAGACGTTGTGATTATTGATTCGGTGCAAACCATGCAAGAAAGCGAAGTTAC
TTCAGCAATTGGTTCGGTATCTCAGGTTCGTGGAGTTACCGCCGATTTAATGAACATTGCTAAAACTAATAATATTACGA
TTTTTGTCGTTGGTCATGTGACTAAGGGAGGAGCTATTGCAGGTCCTAAAACCTTAGAGCACATGGTTGATACGGTTTTA
TACTTTGAGGGTGATAAGCATCATTCTTACCGTTTGTTAAGAGCGGTCAAGAATCGATTTGGTTCCACTAATGAACTAGG
AATTTTTGAGATGATTGATACCGGGCTAAAAGAGGTACAAAATCCGTCAGAAATTTTCTTAGAAGAACGGTTGCACAATG
CGACTGGTTCCGCCATTGTGGTGGCAATGGAGGGGACTCGTCCCATTTTAGTTGAACTGCAAGCCTTAATTACGCCATCT
GTTTTCGGTAATGCCCAAAGAACGGCTACCGGAGTTGATCGTAATCGAGTTTCTTTAATCATGGCAGTTTTAGAAAAACG
GGCTGGATTAATGCTACAAAACCAGGATGCTTATTTAAAAGCAGCTGGGGGAGTGAAGCTAGTTGAGCCAGCAATTGATT
TGGCGATGGCAATTAGTATTGCTTCAAGTTATGAGGATGTTAGTACTAATCCGAAAGAATGTTACATTGGTGAGTTAGGT
TTAACGGGAGAAATTAGACGAGTTGATCGAATTGAGCAACGAATTCGAGAGGCAGACAAGTTAGGCTTTTCTCGGGTAGT
GGTTCCCAAACATAATCTCGATGGATTGCAGTTGAATTCTGAGATTGAAATTGTAGGAGTTACTACAATTCGGGAAGCTT
TAAAATTGTCTTTACCGAAATAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (370-432)

• AAA domain (AAA_25) (73-224)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	66.154	98.913	0.654
radA	Streptococcus pneumoniae D39	66.154	98.913	0.654
radA	Streptococcus pneumoniae R6	66.154	98.913	0.654
radA	Streptococcus pneumoniae TIGR4	66.154	98.913	0.654
radA	Streptococcus mitis NCTC 12261	65.934	98.913	0.652
radA	Streptococcus mitis SK321	65.934	98.913	0.652
radA	Bacillus subtilis subsp. subtilis str. 168	62.256	100	0.624