Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   R4B61_RS04975 Genome accession   NZ_CP137138
Coordinates   1015955..1016254 (+) Length   99 a.a.
NCBI ID   WP_413627179.1    Uniprot ID   -
Organism   Fructilactobacillus vespulae strain Mu01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1010955..1021254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4B61_RS04945 (R4B61_04920) - 1011157..1011537 (+) 381 WP_413627173.1 DUF948 domain-containing protein -
  R4B61_RS04950 (R4B61_04925) - 1011559..1012005 (+) 447 WP_413627174.1 hypothetical protein -
  R4B61_RS04955 (R4B61_04930) ccpA 1012114..1013121 (+) 1008 WP_413627175.1 catabolite control protein A -
  R4B61_RS04960 (R4B61_04935) - 1013199..1013936 (+) 738 WP_413627176.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R4B61_RS04965 (R4B61_04940) comGA 1014017..1014985 (+) 969 WP_413627177.1 competence type IV pilus ATPase ComGA -
  R4B61_RS04970 (R4B61_04945) comGB 1014954..1015955 (+) 1002 WP_413627178.1 competence type IV pilus assembly protein ComGB -
  R4B61_RS04975 (R4B61_04950) comGC 1015955..1016254 (+) 300 WP_413627179.1 competence type IV pilus major pilin ComGC Machinery gene
  R4B61_RS04980 (R4B61_04955) - 1016226..1016846 (+) 621 WP_413627180.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  R4B61_RS04985 (R4B61_04960) - 1016851..1017273 (+) 423 WP_413627181.1 competence type IV pilus minor pilin ComGF -
  R4B61_RS04990 (R4B61_04965) - 1017478..1018488 (+) 1011 WP_413628298.1 class I SAM-dependent methyltransferase -
  R4B61_RS04995 (R4B61_04970) - 1018519..1019709 (+) 1191 WP_413627182.1 acetate/propionate family kinase -
  R4B61_RS05000 (R4B61_04975) - 1019782..1020264 (+) 483 WP_413627183.1 helix-turn-helix domain-containing protein -
  R4B61_RS05005 (R4B61_04980) - 1020237..1021130 (+) 894 WP_413628263.1 IS3 family transposase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11406.24 Da        Isoelectric Point: 9.5670

>NTDB_id=896476 R4B61_RS04975 WP_413627179.1 1015955..1016254(+) (comGC) [Fructilactobacillus vespulae strain Mu01]
MKKRKAFTLIEMTIVLFIISLLILVMIPNLNSQRNRANTIHGSAMVNVVQTQVDAYQDEFGNENVTLEKLEENKYLSKKQ
IQKVNEEKITIENNNVKQG

Nucleotide


Download         Length: 300 bp        

>NTDB_id=896476 R4B61_RS04975 WP_413627179.1 1015955..1016254(+) (comGC) [Fructilactobacillus vespulae strain Mu01]
ATGAAAAAAAGAAAAGCTTTTACTTTAATTGAAATGACAATTGTTTTATTTATTATTTCTTTGCTTATTTTAGTAATGAT
TCCTAATCTTAATTCACAAAGAAATCGGGCAAATACAATCCATGGATCTGCAATGGTTAATGTAGTGCAAACGCAAGTTG
ATGCTTACCAGGACGAATTTGGAAATGAAAATGTTACCTTGGAAAAATTAGAAGAGAATAAATATTTATCAAAAAAACAA
ATTCAAAAAGTGAATGAAGAAAAAATAACAATTGAAAATAACAATGTTAAGCAAGGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Latilactobacillus sakei subsp. sakei 23K

50.515

97.98

0.495