Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   R4B61_RS04315 Genome accession   NZ_CP137138
Coordinates   887415..889214 (+) Length   599 a.a.
NCBI ID   WP_413627054.1    Uniprot ID   -
Organism   Fructilactobacillus vespulae strain Mu01     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 882415..894214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4B61_RS04295 (R4B61_04275) - 884252..884755 (-) 504 WP_413627050.1 hypothetical protein -
  R4B61_RS04300 (R4B61_04280) - 884850..885590 (+) 741 WP_413627051.1 MBL fold metallo-hydrolase -
  R4B61_RS04305 (R4B61_04285) - 885609..886307 (+) 699 WP_413627052.1 adaptor protein MecA -
  R4B61_RS04310 (R4B61_04290) - 886355..887428 (+) 1074 WP_413627053.1 competence protein CoiA -
  R4B61_RS04315 (R4B61_04295) pepF 887415..889214 (+) 1800 WP_413627054.1 oligoendopeptidase F Regulator
  R4B61_RS04320 (R4B61_04300) - 889267..890166 (-) 900 WP_413628281.1 IS3 family transposase -
  R4B61_RS04325 (R4B61_04305) - 890139..890648 (-) 510 WP_413627055.1 transposase -
  R4B61_RS04330 (R4B61_04310) - 890718..891287 (-) 570 WP_413627056.1 DsbA family protein -
  R4B61_RS04335 (R4B61_04315) - 891440..892060 (+) 621 WP_413627057.1 GTP pyrophosphokinase family protein -
  R4B61_RS04340 (R4B61_04320) - 892063..892872 (+) 810 WP_413627058.1 NAD kinase -
  R4B61_RS04345 (R4B61_04325) - 892865..893749 (+) 885 WP_413627059.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 68558.06 Da        Isoelectric Point: 4.7583

>NTDB_id=896470 R4B61_RS04315 WP_413627054.1 887415..889214(+) (pepF) [Fructilactobacillus vespulae strain Mu01]
MKITSSPARKDVPENLQWDLSTIFSSEAEFKAEFSEVSALIPEVKKLNNIVNKDAAGLLETVESVLNVSRRYEKVFVYAH
LNNDVDTSNNKYQGFMDQVTDLGTKLSAAISWFEPEVIKLGEKKINEFTKQLPDLNQYQRFFASILKNEGHVLSVAEEKL
LSKASGIFGAPEKIFSSLDSSDLEFPMVEDGQGNQVRLTNGIYGVLLQSTDREVRAAAFKKLYQVYRQFKNTLASTLSSE
VAVNNFNAEVHHFDSARNEALHSNEVDPQVFDNLIKSVNDHLPLLHRYVALRKKILNLPEMHMYDMYVPLAKEPEQKYTF
DDSKKIMLDALNVLGPDYIGHVQDELNNRWIDVVENQGKRTGAYSSGMYDTNPYILLNWQDNMDNLYTLIHETGHSMHSY
YTTHNQPYQYGDYSIFVAEIASTTNENILTNYLLENTQAKEMKKYILSSYLEGFKGTIFRQTQFAEFEQWIHTQAQAGEP
LTAETMSQKYLEINQKYYGPDMEVDSDIALEWSRIPHFYYDFYVYQYATGFAAASTLADKISFGSEEEKNAYLNYLKAGS
SDIPTEIMKKAGIDMTSVAYLDAAFAKFEQRMDELEKLM

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=896470 R4B61_RS04315 WP_413627054.1 887415..889214(+) (pepF) [Fructilactobacillus vespulae strain Mu01]
ATGAAAATTACTAGTAGTCCAGCCAGAAAAGATGTTCCAGAAAATTTACAATGGGATTTATCCACTATTTTTAGCTCGGA
AGCCGAATTTAAAGCTGAATTTTCCGAGGTTTCTGCATTAATTCCTGAAGTGAAGAAATTAAATAACATAGTTAATAAGG
ATGCCGCAGGTTTATTAGAAACCGTTGAATCTGTTTTAAATGTCAGCCGTAGATATGAAAAAGTGTTTGTCTATGCACAT
TTAAACAATGATGTTGATACTTCAAATAATAAGTACCAGGGATTTATGGATCAAGTAACTGATTTAGGAACTAAATTAAG
TGCTGCGATTTCTTGGTTTGAACCAGAAGTTATTAAATTGGGTGAGAAGAAAATTAACGAATTTACTAAACAACTACCTG
ATTTAAACCAATACCAACGCTTTTTTGCATCTATTTTAAAAAATGAAGGACACGTATTAAGCGTCGCAGAAGAAAAGTTA
CTTTCAAAAGCTTCAGGTATTTTTGGTGCCCCTGAAAAAATATTTAGTTCATTAGATAGTAGCGATTTAGAGTTTCCAAT
GGTTGAAGATGGTCAGGGAAACCAAGTCCGCTTAACTAATGGGATTTATGGTGTTTTATTACAATCAACTGATAGAGAAG
TTCGTGCTGCAGCTTTTAAAAAACTATATCAGGTATACCGTCAGTTTAAAAACACATTGGCTTCAACTCTTTCTTCAGAA
GTTGCCGTTAATAATTTTAATGCAGAAGTTCATCATTTTGATAGTGCGAGAAACGAAGCCTTACATTCTAATGAAGTCGA
TCCGCAAGTTTTTGATAACTTAATTAAAAGCGTTAATGATCATTTACCCCTTCTACATCGTTACGTTGCATTAAGAAAGA
AAATTTTAAACTTACCTGAAATGCATATGTATGATATGTATGTACCATTAGCGAAAGAACCAGAGCAAAAATATACCTTT
GACGATTCTAAAAAAATTATGTTAGATGCATTAAATGTTTTAGGACCAGATTATATTGGACACGTTCAAGATGAATTAAA
TAATCGTTGGATTGATGTTGTTGAAAACCAAGGTAAAAGAACGGGAGCCTATTCATCAGGGATGTATGATACCAATCCGT
ATATTTTACTAAATTGGCAAGATAACATGGATAATCTTTATACCTTAATTCATGAGACTGGTCATAGTATGCATAGTTAC
TATACAACTCATAATCAACCATACCAGTATGGGGATTATTCTATTTTTGTCGCAGAGATTGCTTCTACTACTAACGAAAA
TATCTTAACTAATTATCTCTTAGAAAATACACAAGCAAAAGAGATGAAAAAATATATTTTAAGTTCCTATCTAGAAGGGT
TTAAAGGTACTATTTTCAGACAGACTCAGTTTGCTGAGTTTGAACAATGGATTCATACTCAGGCACAAGCAGGAGAACCA
TTAACGGCTGAAACAATGAGTCAAAAGTATTTAGAAATTAATCAAAAGTACTATGGACCGGATATGGAAGTTGATAGTGA
TATTGCGTTAGAATGGTCGAGAATTCCACACTTCTATTATGATTTTTACGTTTACCAGTATGCCACTGGATTTGCTGCAG
CTTCGACCTTAGCTGATAAAATTTCATTTGGAAGTGAAGAAGAAAAGAATGCTTATTTAAACTATCTAAAAGCAGGTAGT
TCAGATATTCCAACGGAAATAATGAAAAAGGCAGGAATAGACATGACCAGTGTTGCTTATTTAGATGCTGCTTTTGCTAA
ATTTGAACAACGGATGGATGAATTAGAAAAATTAATGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-185)

Peptidase family M3 (Peptidase_M3)

(206-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.327

99.165

0.489