Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | LDN16_RS03475 | Genome accession | NZ_AP024961 |
| Coordinates | 734098..734805 (-) | Length | 235 a.a. |
| NCBI ID | WP_317983973.1 | Uniprot ID | - |
| Organism | Legionella pneumophila strain 80-045 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 729098..739805
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDN16_RS03460 (LEG80045_06580) | - | 731973..732485 (-) | 513 | WP_027219362.1 | pilus assembly protein | - |
| LDN16_RS03465 (LEG80045_06590) | - | 732482..733549 (-) | 1068 | WP_161514102.1 | PilW family protein | - |
| LDN16_RS03470 (LEG80045_06600) | pilV | 733546..734085 (-) | 540 | WP_010946368.1 | type IV pilus modification protein PilV | - |
| LDN16_RS03475 (LEG80045_06610) | fimT | 734098..734805 (-) | 708 | WP_317983973.1 | GspH/FimT family pseudopilin | Machinery gene |
| LDN16_RS03480 (LEG80045_06620) | - | 735018..735878 (-) | 861 | WP_027219358.1 | polysaccharide deacetylase family protein | - |
| LDN16_RS03485 (LEG80045_06630) | - | 736055..737404 (-) | 1350 | WP_072401724.1 | lpg0634 family Dot/Icm T4SS effector | - |
| LDN16_RS03490 (LEG80045_06640) | - | 737694..739175 (+) | 1482 | WP_223919035.1 | glycosyltransferase family 39 protein | - |
Sequence
Protein
Download Length: 235 a.a. Molecular weight: 24813.39 Da Isoelectric Point: 7.0383
>NTDB_id=89647 LDN16_RS03475 WP_317983973.1 734098..734805(-) (fimT) [Legionella pneumophila strain 80-045]
MNKVITESQKFTLRNVANMLFCVESSVLPAQSNIAQKIQTKGIMYNDLCKDGFDTEAPLNSNSLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDQAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP
MNKVITESQKFTLRNVANMLFCVESSVLPAQSNIAQKIQTKGIMYNDLCKDGFDTEAPLNSNSLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNNRLTSNIDSLVSSLNYARGVALDQAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWNNGALNCP
Nucleotide
Download Length: 708 bp
>NTDB_id=89647 LDN16_RS03475 WP_317983973.1 734098..734805(-) (fimT) [Legionella pneumophila strain 80-045]
TTGAACAAAGTGATAACGGAATCACAAAAGTTCACTCTGCGCAACGTAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
ATTGCCCGCACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGATCTTTGTAAAGACGGCTTCG
ATACTGAGGCCCCTCTTAACAGCAACTCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATCATCTTAACTCTAATCGTTCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTAGCACTTGATCAGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGCAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCTCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCCGGAACAACACCCGGCCAGGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA
TTGAACAAAGTGATAACGGAATCACAAAAGTTCACTCTGCGCAACGTAGCTAATATGTTATTTTGCGTTGAGAGTAGTGT
ATTGCCCGCACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGATCTTTGTAAAGACGGCTTCG
ATACTGAGGCCCCTCTTAACAGCAACTCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATCATCTTAACTCTAATCGTTCCTTCATTAAGAACTATGATTTTGAATAACCGTTTGACTTCAAACATTGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTAGCACTTGATCAGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACGGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTGAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGCAACTTCACTATGTGTGATAACAGAGGCAATGCGTTTGCTCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCCGGAACAACACCCGGCCAGGCAGTCTGGAATAATGGAGCTCTGAACTGCCCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Legionella pneumophila strain Lp02 |
97.447 |
100 |
0.974 |