Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   R4540_RS03995 Genome accession   NZ_CP137135
Coordinates   876622..878046 (-) Length   474 a.a.
NCBI ID   WP_001183680.1    Uniprot ID   A0A0H3AJR3
Organism   Vibrio cholerae V52     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 871622..883046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4540_RS03970 (R4540_03965) purT 872131..873306 (-) 1176 WP_000468093.1 phosphoribosylglycinamide formyltransferase 2 -
  R4540_RS03975 (R4540_03970) - 873460..874335 (-) 876 WP_000462866.1 AEC family transporter -
  R4540_RS03980 (R4540_03975) cdd 874494..875381 (-) 888 WP_001245910.1 cytidine deaminase -
  R4540_RS03985 (R4540_03980) - 875551..876225 (-) 675 WP_000266240.1 LrgB family protein -
  R4540_RS03990 (R4540_03985) - 876216..876590 (-) 375 WP_001881007.1 CidA/LrgA family protein -
  R4540_RS03995 (R4540_03990) sbcB 876622..878046 (-) 1425 WP_001183680.1 exodeoxyribonuclease I Machinery gene
  R4540_RS04000 (R4540_03995) - 878192..879565 (-) 1374 WP_000117953.1 L-cystine transporter -
  R4540_RS04005 (R4540_04000) msrB 879911..880357 (+) 447 WP_000935885.1 peptide-methionine (R)-S-oxide reductase MsrB -
  R4540_RS04010 (R4540_04005) cobT 880968..881993 (+) 1026 WP_000887084.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  R4540_RS04015 (R4540_04010) - 881993..882778 (+) 786 WP_000718964.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54598.02 Da        Isoelectric Point: 6.0792

>NTDB_id=896428 R4540_RS03995 WP_001183680.1 876622..878046(-) (sbcB) [Vibrio cholerae V52]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDTEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=896428 R4540_RS03995 WP_001183680.1 876622..878046(-) (sbcB) [Vibrio cholerae V52]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCAAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCATCAACCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGTCACTAC
ACTAGCTGGATTGTGCCTATTGCTTGGCATCCAACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTCGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCCGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCACACCTTAACCGATACCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAGCATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3AJR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

100

100

1