Detailed information NTG0896394

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: R5L00_RS02370
• Genome accession: NZ_CP137134
• Coordinates: 533019..534377 (-)
• Length: 452 a.a.
• NCBI ID: WP_107692452.1
• Uniprot ID: A0AAU0KLN5
• Organism: Nitrosospira sp. Is2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 528019..539377

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R5L00_RS02355 (R5L00_02355)	-	530202..531587 (+)	1386	WP_317653179.1	DEAD/DEAH box helicase	-
R5L00_RS02360 (R5L00_02360)	-	531732..532118 (-)	387	WP_258192498.1	group II truncated hemoglobin	-
R5L00_RS02365 (R5L00_02365)	-	532134..532958 (-)	825	WP_317653183.1	ceramidase domain-containing protein	-
R5L00_RS02370 (R5L00_02370)	radA	533019..534377 (-)	1359	WP_107692452.1	DNA repair protein RadA	Machinery gene
R5L00_RS02375 (R5L00_02375)	-	534604..535164 (-)	561	WP_317653186.1	sugar O-acetyltransferase	-
R5L00_RS02380 (R5L00_02380)	-	535552..537198 (+)	1647	WP_317653188.1	MFS transporter	-
R5L00_RS02385 (R5L00_02385)	-	537312..538010 (+)	699	WP_107692450.1	pirin family protein	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 48518.04 Da
• Isoelectric Point: 7.2761

>NTDB_id=896394 R5L00_RS02370 WP_107692452.1 533019..534377(-) (radA) [Nitrosospira sp. Is2]
MAKSKSTYTCIECGGQTLKWQGQCPHCQAWNTLVEAVAERVAPRFAPVSETGQVQNLSEVDAGEEARYSTSIAEFDRVLG
GGLVEGGVVLLGGDPGIGKSTLLLQALCHMSHMSPAREALYVSGEESARQVALRARRMALDAEAIHLLAEIRLERIQAVL
TERRPGIAVIDSIQTIYSDALQSAPGSVAQVRECAAQLTRLAKASGTCMILVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
THSSFRMIRAFKNRFGAVNELGVFAMTDKGLREVSNPSALFLSHHGGQVAGSCVMVTQEGTRPLLVEIQALVDEAHAPNP
RRLSVGLEQNRLAMLLAVLHRHAGIACFDQDVFVNAVGGVKITEPGVDLAVLLAIVSSLKNKPLPEKTVVFGEVGLAGEV
RPVQRGQERLKEAAKLGFVRAIVPKANLSKHAIPGIEIIAVERVEEAVAKMR

Nucleotide

• Length: 1359 bp

>NTDB_id=896394 R5L00_RS02370 WP_107692452.1 533019..534377(-) (radA) [Nitrosospira sp. Is2]
ATGGCTAAAAGCAAATCCACGTACACCTGTATCGAATGCGGCGGTCAGACTCTCAAATGGCAGGGTCAGTGCCCGCATTG
TCAGGCATGGAACACGCTGGTTGAGGCAGTTGCCGAGAGAGTTGCCCCGCGCTTCGCGCCGGTGTCGGAAACTGGGCAGG
TACAGAACTTGAGCGAGGTAGATGCGGGAGAAGAGGCGCGTTATTCCACAAGCATAGCCGAGTTTGATCGCGTGCTGGGA
GGCGGCCTGGTCGAGGGTGGGGTGGTATTGCTGGGAGGAGACCCCGGAATTGGCAAATCCACGCTGTTGCTGCAAGCGCT
ATGTCATATGTCCCATATGTCTCCCGCACGAGAGGCGTTGTATGTCAGCGGCGAAGAATCGGCTCGCCAAGTGGCGCTAC
GGGCAAGGCGCATGGCGCTGGATGCGGAAGCGATACACCTGTTGGCGGAGATCCGGTTGGAGCGTATTCAGGCAGTGCTG
ACCGAACGCAGACCCGGCATCGCGGTGATTGATTCGATACAGACGATTTATTCCGATGCGTTGCAATCCGCGCCCGGTTC
CGTTGCTCAGGTCCGGGAATGTGCCGCCCAGTTGACGAGGCTGGCCAAGGCCAGCGGCACGTGCATGATTCTGGTTGGCC
ACGTCACCAAGGAAGGGTCACTGGCCGGCCCCCGGGTTCTCGAGCACATGGTGGACACCGTGCTATATTTCGAAGGGGAC
ACCCACTCCAGTTTCCGCATGATTCGGGCTTTCAAGAACCGGTTTGGCGCGGTGAACGAGTTGGGCGTATTCGCCATGAC
GGACAAGGGCTTGCGTGAAGTCAGCAATCCTTCGGCTCTATTCCTTTCTCACCACGGCGGACAAGTCGCCGGTTCCTGTG
TGATGGTAACCCAGGAAGGTACGCGTCCCCTGCTGGTGGAGATTCAGGCGCTGGTGGATGAGGCCCATGCGCCCAATCCA
AGACGGCTGAGCGTTGGGCTGGAACAGAACCGTCTGGCAATGTTGCTGGCTGTGCTGCACCGCCACGCGGGCATTGCCTG
CTTTGATCAGGATGTCTTCGTCAATGCGGTAGGAGGCGTAAAAATTACCGAGCCAGGGGTCGATCTAGCGGTATTGCTTG
CGATTGTTTCGTCGCTTAAGAACAAGCCCTTGCCGGAGAAAACGGTGGTGTTTGGGGAAGTCGGCCTGGCGGGGGAAGTA
CGCCCGGTGCAGCGCGGCCAGGAACGACTGAAGGAAGCGGCTAAACTCGGGTTCGTGCGTGCGATCGTACCTAAAGCCAA
CCTATCTAAACACGCCATCCCAGGTATCGAGATTATTGCAGTGGAACGGGTGGAGGAAGCCGTGGCAAAAATGCGCTGA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (344-427)

• AAA domain (AAA_25) (64-219)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.22	100	0.504
radA	Streptococcus pneumoniae Rx1	47.588	100	0.48
radA	Streptococcus pneumoniae D39	47.588	100	0.48
radA	Streptococcus pneumoniae R6	47.588	100	0.48
radA	Streptococcus pneumoniae TIGR4	47.588	100	0.48
radA	Streptococcus mitis SK321	47.588	100	0.48
radA	Streptococcus mitis NCTC 12261	47.368	100	0.478