Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PTKU64_RS01570 Genome accession   NZ_AP024955
Coordinates   346250..347770 (-) Length   506 a.a.
NCBI ID   WP_229512445.1    Uniprot ID   -
Organism   Paraburkholderia terrae strain KU-64     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341250..352770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PTKU64_RS01545 (PTKU64_03050) - 342029..342664 (-) 636 WP_007579697.1 LON peptidase substrate-binding domain-containing protein -
  PTKU64_RS01550 (PTKU64_03060) rapZ 342729..343622 (-) 894 WP_042306310.1 RNase adapter RapZ -
  PTKU64_RS01555 (PTKU64_03070) hprK 343700..344668 (-) 969 WP_007579699.1 HPr(Ser) kinase/phosphatase -
  PTKU64_RS01560 (PTKU64_03080) - 344899..345414 (-) 516 WP_035538101.1 PTS sugar transporter subunit IIA -
  PTKU64_RS01565 (PTKU64_03090) hpf 345715..346074 (-) 360 WP_007579701.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PTKU64_RS01570 (PTKU64_03100) rpoN/rpoN1 346250..347770 (-) 1521 WP_229512445.1 RNA polymerase factor sigma-54 Machinery gene
  PTKU64_RS01575 (PTKU64_03110) lptB 348011..348793 (-) 783 WP_042306307.1 LPS export ABC transporter ATP-binding protein -
  PTKU64_RS01580 (PTKU64_03120) lptA 348790..349467 (-) 678 WP_042306306.1 lipopolysaccharide transport periplasmic protein LptA -
  PTKU64_RS01585 (PTKU64_03130) lptC 349488..350093 (-) 606 WP_042306305.1 LPS export ABC transporter periplasmic protein LptC -
  PTKU64_RS01590 (PTKU64_03140) - 350090..350650 (-) 561 WP_007579706.1 KdsC family phosphatase -
  PTKU64_RS01595 (PTKU64_03150) kdsD 350650..351633 (-) 984 WP_007579707.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55695.56 Da        Isoelectric Point: 4.8824

>NTDB_id=89629 PTKU64_RS01570 WP_229512445.1 346250..347770(-) (rpoN/rpoN1) [Paraburkholderia terrae strain KU-64]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAISQNPLLETEDDWIASPLRVAADGTVISQTSQNTSPEGMS
SSPPSSSSSTSSGESQENGEPQGVDEYNGMGSDSNSDANQWNLDDYGRSGNASDDDDLPPLQIHESTTTLRDHLTAQLRV
TGASARDRALITFLIESLDDDGYLTATFEEILTDLPEELEVDTDELNAALALLHSFDPAGVGARSASECLRLQLCRLEPS
PTRTLALDIVAHHLELLAARDFTRLRKYLKASDDDLREAHALIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWQAELN
PEVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREI
ADTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQG
FVVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=89629 PTKU64_RS01570 WP_229512445.1 346250..347770(-) (rpoN/rpoN1) [Paraburkholderia terrae strain KU-64]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAGCATCTTGCGCTGACACCACAACTGCAACAGTCCATCCGACTGCTGCA
GCTGTCTACGCTTGAACTGCAGCAGGAAGTGTCGATGGCGATCTCCCAGAATCCGCTGCTCGAAACGGAAGACGACTGGA
TCGCCAGTCCGTTGCGCGTCGCCGCCGACGGCACGGTCATCTCGCAGACGTCGCAGAACACCTCGCCGGAAGGAATGTCG
AGTTCGCCGCCGTCTTCTTCGTCGTCCACTTCCTCCGGCGAAAGCCAGGAGAACGGCGAACCCCAGGGCGTCGACGAATA
CAACGGCATGGGTTCGGACTCGAACTCGGATGCCAACCAGTGGAATCTCGACGACTACGGCCGTTCGGGCAACGCATCGG
ACGACGACGATCTGCCGCCGCTGCAAATCCACGAATCGACCACGACGCTGCGCGATCACTTGACTGCTCAACTTCGTGTC
ACGGGAGCAAGCGCACGCGACCGCGCGCTCATCACGTTCCTGATCGAATCACTCGACGACGACGGCTATCTGACTGCCAC
CTTCGAAGAAATCCTCACCGATCTCCCCGAAGAACTGGAAGTCGATACCGACGAACTCAACGCGGCCCTCGCCTTACTGC
ACAGCTTCGACCCAGCGGGTGTCGGCGCGCGTTCGGCGTCCGAATGCCTGCGTTTGCAGTTGTGCCGGCTCGAGCCCTCG
CCCACGCGCACGCTCGCGCTGGACATCGTCGCGCATCATCTGGAACTGCTCGCCGCGCGCGACTTCACGCGTCTGCGCAA
ATACCTGAAGGCAAGCGACGACGATCTGCGCGAAGCGCATGCGCTGATCCGCTCGCTGGAGCCATTCCCCGGCGCGGCCT
ACGGTAAGGCCGAAGCGGACTACGTCGTGCCCGACATCATGGTGCGCAAAACGGCACAGGGATGGCAGGCGGAACTGAAT
CCCGAAGTCGTGCCGAAACTGCGTATCAACCATCTGTACGCGAATATCCTGCGCAACAATCGCGGCGATCCGGGCAGTGG
TTCGCTGCGGCAGCAACTGCAGGAAGCGCGTTGGCTGATCAAGAATATCCAGCAGCGGTTCGAGACGATCCTGCGTGTCG
CACAGGCAATTGTGGAGCGTCAAAAGAACTTTTTCGCCCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATA
GCTGATACGCTGGGTTTACACGAGTCGACGGTCTCACGTGTGACAACCGGCAAGTACATGCTCACCCCATTCGGGACGCT
TGAATTTAAGTACTTCTTCGGATCGCACGTATCCACCGACACGGGGGGCGCGGCCTCTTCAACGGCCATTCGCGCACTCA
TCAAGCAACTGATAGGAGCGGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCGGAACAGGGT
TTCGTCGTCGCTCGCCGTACCGTTGCGAAATACCGCGAAGCACTGAAGATCCCAGCAGTCAATCTGCGCAAGTCTCTTTA
G

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(349-504)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

66.405

100

0.668

Multiple sequence alignment