Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R4705_RS03490 Genome accession   NZ_CP137115
Coordinates   665226..665936 (+) Length   236 a.a.
NCBI ID   WP_000760675.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 20614-6     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 660226..670936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4705_RS03475 - 660767..661015 (-) 249 WP_000364990.1 YneF family protein -
  R4705_RS03480 treC 661271..662896 (-) 1626 WP_050084115.1 alpha,alpha-phosphotrehalase -
  R4705_RS03485 treP 663074..665041 (-) 1968 WP_050084114.1 PTS system trehalose-specific EIIBC component -
  R4705_RS03490 treR 665226..665936 (+) 711 WP_000760675.1 trehalose operon repressor Regulator
  R4705_RS03495 - 666091..667425 (+) 1335 Protein_691 ISL3 family transposase -
  R4705_RS03500 amiF 667501..668427 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  R4705_RS03505 amiE 668438..669505 (-) 1068 WP_000159554.1 ABC transporter ATP-binding protein Regulator
  R4705_RS03510 amiD 669514..670440 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27621.80 Da        Isoelectric Point: 8.9698

>NTDB_id=896238 R4705_RS03490 WP_000760675.1 665226..665936(+) (treR) [Streptococcus pneumoniae strain 20614-6]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKEPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=896238 R4705_RS03490 WP_000760675.1 665226..665936(+) (treR) [Streptococcus pneumoniae strain 20614-6]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGAACCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.746

100

0.597