Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R4701_RS05240 Genome accession   NZ_CP137114
Coordinates   1037495..1038253 (-) Length   252 a.a.
NCBI ID   WP_000410380.1    Uniprot ID   A0A6G2D2R9
Organism   Streptococcus pneumoniae strain 15P3054     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1032495..1043253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4701_RS05215 pth 1032528..1033097 (-) 570 WP_000163932.1 aminoacyl-tRNA hydrolase -
  R4701_RS05220 ychF 1033168..1034283 (-) 1116 WP_001218720.1 redox-regulated ATPase YchF -
  R4701_RS05225 - 1034367..1034561 (-) 195 WP_000285194.1 DUF951 domain-containing protein -
  R4701_RS05230 dnaN 1034626..1035762 (-) 1137 WP_000581157.1 DNA polymerase III subunit beta -
  R4701_RS05235 dnaA 1035921..1037282 (-) 1362 WP_000660615.1 chromosomal replication initiator protein DnaA -
  R4701_RS05240 spo0J 1037495..1038253 (-) 759 WP_000410380.1 ParB/RepB/Spo0J family partition protein Regulator
  R4701_RS05245 htrA 1038311..1039492 (-) 1182 WP_000681597.1 S1C family serine protease Regulator
  R4701_RS05250 rlmH 1039675..1040154 (+) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R4701_RS05260 comC/comC2 1040436..1040561 (+) 126 WP_000799686.1 competence-stimulating peptide ComC Regulator
  R4701_RS05265 comD/comD2 1040582..1041907 (+) 1326 WP_000364846.1 competence system sensor histidine kinase ComD Regulator
  R4701_RS05270 comE 1041904..1042656 (+) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29179.54 Da        Isoelectric Point: 9.0305

>NTDB_id=896171 R4701_RS05240 WP_000410380.1 1037495..1038253(-) (spo0J) [Streptococcus pneumoniae strain 15P3054]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLEALLTEKKQKKQQKTNYFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=896171 R4701_RS05240 WP_000410380.1 1037495..1038253(-) (spo0J) [Streptococcus pneumoniae strain 15P3054]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
ACTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATTATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G2D2R9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.593

100

0.508