Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R4707_RS08630 Genome accession   NZ_CP137113
Coordinates   1632605..1632871 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   A0A0E9GZQ4
Organism   Streptococcus pneumoniae strain ZGX     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1632076..1632300 1632605..1632871 flank 305


Gene organization within MGE regions


Location: 1632076..1632871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4707_RS08625 - 1632076..1632479 (+) 404 Protein_1654 helix-turn-helix domain-containing protein -
  R4707_RS08630 HI0659 1632605..1632871 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=896135 R4707_RS08630 WP_001808618.1 1632605..1632871(+) (HI0659) [Streptococcus pneumoniae strain ZGX]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=896135 R4707_RS08630 WP_001808618.1 1632605..1632871(+) (HI0659) [Streptococcus pneumoniae strain ZGX]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E9GZQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534