Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   R4707_RS04030 Genome accession   NZ_CP137113
Coordinates   752520..753551 (-) Length   343 a.a.
NCBI ID   WP_050206160.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ZGX     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 747520..758551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4707_RS03980 - 747601..748362 (-) 762 WP_001107751.1 SDR family NAD(P)-dependent oxidoreductase -
  R4707_RS03985 ytpR 748404..749030 (-) 627 WP_081543161.1 YtpR family tRNA-binding protein -
  R4707_RS03990 - 749046..749363 (-) 318 WP_000615776.1 thioredoxin family protein -
  R4707_RS03995 - 749360..749659 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  R4707_RS04000 - 749753..749884 (+) 132 WP_001811306.1 hypothetical protein -
  R4707_RS11405 - 749996..750191 (-) 196 Protein_771 cell wall-binding protein -
  R4707_RS04010 - 750352..751026 (-) 675 WP_081543159.1 LiaF transmembrane domain-containing protein -
  R4707_RS04015 - 751032..751478 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  R4707_RS04020 - 751592..752095 (-) 504 WP_044789202.1 phosphatase PAP2 family protein -
  R4707_RS04025 - 752092..752454 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  R4707_RS04030 rcrQ 752520..753551 (-) 1032 WP_050206160.1 ABC transporter ATP-binding protein/permease Regulator
  R4707_RS04035 rcrP 753558..754379 (-) 822 WP_000601683.1 ABC transporter permease Regulator
  R4707_RS04040 - 754396..754867 (-) 472 Protein_778 MarR family winged helix-turn-helix transcriptional regulator -
  R4707_RS04045 - 754991..755707 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R4707_RS04050 ply 756588..758003 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  R4707_RS04055 - 758014..758424 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38037.29 Da        Isoelectric Point: 4.4404

>NTDB_id=896089 R4707_RS04030 WP_050206160.1 752520..753551(-) (rcrQ) [Streptococcus pneumoniae strain ZGX]
MDFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPAQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSIGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQRVAIVGPTGAGKTTIVNLLMKFYEIDKGSIRI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTFFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=896089 R4707_RS04030 WP_050206160.1 752520..753551(-) (rcrQ) [Streptococcus pneumoniae strain ZGX]
ATGGACTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGCTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAATAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAGGGTTGCCATTGTTG
GGCCGACTGGGGCTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCGCATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATTCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

37.5

100

0.376