Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LLNCDO184_RS05420 Genome accession   NZ_CP155124
Coordinates   985092..986162 (-) Length   356 a.a.
NCBI ID   WP_063283631.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain NCDO184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 980092..991162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO184_RS05405 (LLNCDO184_05395) dprA 980390..981238 (+) 849 WP_012897825.1 DNA-processing protein DprA Machinery gene
  LLNCDO184_RS05410 (LLNCDO184_05400) topA 981500..983632 (+) 2133 WP_063283633.1 type I DNA topoisomerase -
  LLNCDO184_RS05415 (LLNCDO184_05405) trmFO 983704..985047 (+) 1344 WP_063283632.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LLNCDO184_RS05420 (LLNCDO184_05410) xerS 985092..986162 (-) 1071 WP_063283631.1 tyrosine recombinase XerS Machinery gene
  LLNCDO184_RS05425 (LLNCDO184_05415) - 986754..987368 (-) 615 Protein_1048 tyrosine-type recombinase/integrase -
  LLNCDO184_RS05430 (LLNCDO184_05420) - 987517..987654 (-) 138 WP_153915251.1 hypothetical protein -
  LLNCDO184_RS05435 (LLNCDO184_05425) - 988554..990311 (+) 1758 WP_014570605.1 CocE/NonD family hydrolase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41398.15 Da        Isoelectric Point: 9.6568

>NTDB_id=896086 LLNCDO184_RS05420 WP_063283631.1 985092..986162(-) (xerS) [Lactococcus lactis subsp. lactis strain NCDO184]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAINALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=896086 LLNCDO184_RS05420 WP_063283631.1 985092..986162(-) (xerS) [Lactococcus lactis subsp. lactis strain NCDO184]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTAATGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTGACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGACACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.404

100

0.764