Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R4707_RS03740 Genome accession   NZ_CP137113
Coordinates   711272..711982 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain ZGX     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 706272..716982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4707_RS03725 - 706813..707061 (-) 249 WP_000364990.1 YneF family protein -
  R4707_RS03730 treC 707317..708942 (-) 1626 WP_081543046.1 alpha,alpha-phosphotrehalase -
  R4707_RS03735 treP 709120..711087 (-) 1968 WP_061641007.1 PTS system trehalose-specific EIIBC component -
  R4707_RS03740 treR 711272..711982 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R4707_RS03745 - 712137..713443 (+) 1307 Protein_741 transposase -
  R4707_RS03750 amiF 713518..714444 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  R4707_RS03755 amiE 714455..715522 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  R4707_RS03760 amiD 715531..716457 (-) 927 WP_000103697.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=896082 R4707_RS03740 WP_000760673.1 711272..711982(+) (treR) [Streptococcus pneumoniae strain ZGX]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=896082 R4707_RS03740 WP_000760673.1 711272..711982(+) (treR) [Streptococcus pneumoniae strain ZGX]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAGAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593